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esrra estrogen-related receptor alpha [ Maylandia zebra (zebra mbuna) ]

Gene ID: 101469665, updated on 8-Mar-2024

Summary

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Gene symbol
esrra
Gene description
estrogen-related receptor alpha
See related
Ensembl:ENSMZEG00005013239
Gene type
protein coding
RefSeq status
MODEL
Organism
Maylandia zebra
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Cichlomorphae; Cichliformes; Cichlidae; African cichlids; Pseudocrenilabrinae; Haplochromini; Maylandia; Maylandia zebra complex
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: LG10
Exon count:
10
Annotation release Status Assembly LG Location
104 current M_zebra_UMD2a (GCF_000238955.4) LG10 NC_036789.1 (8960591..8974816)
101 previous assembly MetZeb1.1 (GCF_000238955.1) Unplaced Scaffold NW_004531761.1 (663528..677513, complement)

Linkage Group LG10 - NC_036789.1Genomic Context describing neighboring genes Neighboring gene adenylosuccinate synthase, like Neighboring gene potassium channel subfamily K member 4 Neighboring gene peroxiredoxin 5 Neighboring gene barrier to autointegration nuclear assembly factor 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables nuclear steroid receptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables steroid binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
steroid hormone receptor ERR1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Maylandia zebra Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference M_zebra_UMD2a Primary Assembly

Genomic

  1. NC_036789.1 Reference M_zebra_UMD2a Primary Assembly

    Range
    8960591..8974816
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_004557313.5 → XP_004557370.1  steroid hormone receptor ERR1

    See identical proteins and their annotated locations for XP_004557370.1

    UniProtKB/TrEMBL
    A0A3P9C5P2
    Related
    ENSMZEP00005017593.1, ENSMZET00005018159.1
    Conserved Domains (2) summary
    cd06946
    Location:209 → 428
    NR_LBD_ERR; The ligand binding domain of estrogen receptor-related nuclear receptors
    cd07170
    Location:91 → 187
    NR_DBD_ERR; DNA-binding domain of estrogen related receptors (ERR) is composed of two C4-type zinc fingers

  2. XM_004557312.5 → XP_004557369.1  steroid hormone receptor ERR1

    See identical proteins and their annotated locations for XP_004557369.1

    UniProtKB/TrEMBL
    A0A3P9C5P2
    Conserved Domains (2) summary
    cd06946
    Location:209 → 428
    NR_LBD_ERR; The ligand binding domain of estrogen receptor-related nuclear receptors
    cd07170
    Location:91 → 187
    NR_DBD_ERR; DNA-binding domain of estrogen related receptors (ERR) is composed of two C4-type zinc fingers

  3. XM_004557311.5 → XP_004557368.1  steroid hormone receptor ERR1

    See identical proteins and their annotated locations for XP_004557368.1

    UniProtKB/TrEMBL
    A0A3P9C5P2
    Conserved Domains (2) summary
    cd06946
    Location:209 → 428
    NR_LBD_ERR; The ligand binding domain of estrogen receptor-related nuclear receptors
    cd07170
    Location:91 → 187
    NR_DBD_ERR; DNA-binding domain of estrogen related receptors (ERR) is composed of two C4-type zinc fingers
Nucleotide Protein
Heading Accession and Version

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