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wdr35 WD repeat domain 35 [ Maylandia zebra (zebra mbuna) ]

Gene ID: 101467717, updated on 8-Mar-2024

Summary

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Gene symbol
wdr35
Gene description
WD repeat domain 35
See related
Ensembl:ENSMZEG00005009317
Gene type
protein coding
RefSeq status
MODEL
Organism
Maylandia zebra
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Cichlomorphae; Cichliformes; Cichlidae; African cichlids; Pseudocrenilabrinae; Haplochromini; Maylandia; Maylandia zebra complex
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: LG19
Exon count:
28
Annotation release Status Assembly LG Location
104 current M_zebra_UMD2a (GCF_000238955.4) LG19 NC_036798.1 (12295948..12320113, complement)
101 previous assembly MetZeb1.1 (GCF_000238955.1) Unplaced Scaffold NW_004531771.1 (11893..38050, complement)

Linkage Group LG19 - NC_036798.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC106676480 Neighboring gene potassium voltage-gated channel subfamily S member 3 Neighboring gene matrilin-3 Neighboring gene FOS like 2, AP-1 transcription factor subunit

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in intraciliary retrograde transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in non-motile cilium assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein localization to cilium IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of intraciliary transport particle A IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in non-motile cilium IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
WD repeat-containing protein 35

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Maylandia zebra Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference M_zebra_UMD2a Primary Assembly

Genomic

  1. NC_036798.1 Reference M_zebra_UMD2a Primary Assembly

    Range
    12295948..12320113 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_024806292.1 → XP_024662060.1  WD repeat-containing protein 35 isoform X2

    UniProtKB/TrEMBL
    A0A3P9BRD4, A0A3P9BRD9
    Related
    ENSMZEP00005012484.1, ENSMZET00005012923.1
    Conserved Domains (4) summary
    COG2319
    Location:6 → 216
    WD40; WD40 repeat [General function prediction only]
    sd00006
    Location:846 → 895
    TPR; TPR repeat [structural motif]
    sd00039
    Location:18 → 69
    7WD40; WD40 repeat [structural motif]
    pfam04053
    Location:674 → 721
    Coatomer_WDAD; Coatomer WD associated region

  2. XM_024806291.1 → XP_024662059.1  WD repeat-containing protein 35 isoform X1

    UniProtKB/TrEMBL
    A0A3P9BRD9, A0A3P9BS47
    Related
    ENSMZEP00005012456.1, ENSMZET00005012895.1
    Conserved Domains (3) summary
    COG2319
    Location:6 → 216
    WD40; WD40 repeat [General function prediction only]
    sd00039
    Location:18 → 69
    7WD40; WD40 repeat [structural motif]
    pfam04053
    Location:686 → 733
    Coatomer_WDAD; Coatomer WD associated region
Nucleotide Protein
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Gene LinkOut

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