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LOC101391322 collagen type II alpha 1 chain [ Ceratotherium simum simum (southern white rhinoceros) ]

Gene ID: 101391322, updated on 8-Mar-2024

Summary

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Gene symbol
LOC101391322
Gene description
collagen type II alpha 1 chain
Gene type
protein coding
RefSeq status
MODEL
Organism
Ceratotherium simum simum (sub-species: simum)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Perissodactyla; Rhinocerotidae; Ceratotherium
Also known as
COL2A1
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
54
Annotation release Status Assembly Chr Location
101 current CerSimSim1.0 (GCF_000283155.1) Unplaced Scaffold NW_004454183.1 (6266514..6298963, complement)

NW_004454183.1Genomic Context describing neighboring genes Neighboring gene vitamin D receptor Neighboring gene transmembrane protein 106C Neighboring gene SUMO specific peptidase 1 Neighboring gene phosphofructokinase, muscle

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_004454183.1 Unplaced Scaffold Reference CerSimSim1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables extracellular matrix structural constituent IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of collagen type II trimer IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
collagen alpha-1(II) chain

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Ceratotherium simum simum Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference CerSimSim1.0 Primary Assembly

Genomic

  1. NW_004454183.1 Reference CerSimSim1.0 Primary Assembly

    Range
    6266514..6298963 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_004428938.2 → XP_004428995.1  collagen alpha-1(II) chain isoform X2

    Conserved Domains (2) summary
    pfam01391
    Location:732 → 791
    Collagen; Collagen triple helix repeat (20 copies)
    pfam01410
    Location:1185 → 1417
    COLFI; Fibrillar collagen C-terminal domain

  2. XM_014786399.1 → XP_014641885.1  collagen alpha-1(II) chain isoform X3

    Conserved Domains (3) summary
    pfam01391
    Location:627 → 686
    Collagen; Collagen triple helix repeat (20 copies)
    pfam00093
    Location:34 → 89
    VWC; von Willebrand factor type C domain
    pfam01410
    Location:1080 → 1312
    COLFI; Fibrillar collagen C-terminal domain

  3. XM_004428937.2 → XP_004428994.1  collagen alpha-1(II) chain isoform X1

    Conserved Domains (3) summary
    pfam01391
    Location:801 → 860
    Collagen; Collagen triple helix repeat (20 copies)
    pfam00093
    Location:34 → 89
    VWC; von Willebrand factor type C domain
    pfam01410
    Location:1254 → 1486
    COLFI; Fibrillar collagen C-terminal domain
Nucleotide Protein
Heading Accession and Version

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