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NPLOC4 NPL4 homolog, ubiquitin recognition factor [ Odobenus rosmarus divergens (Pacific walrus) ]

Gene ID: 101381856, updated on 8-Mar-2024

Summary

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Gene symbol
NPLOC4
Gene description
NPL4 homolog, ubiquitin recognition factor
Gene type
protein coding
RefSeq status
MODEL
Organism
Odobenus rosmarus divergens (sub-species: divergens)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Pinnipedia; Odobenidae; Odobenus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
17
Annotation release Status Assembly Chr Location
101 current Oros_1.0 (GCF_000321225.1) Unplaced Scaffold NW_004450479.1 (1340978..1400900)

NW_004450479.1Genomic Context describing neighboring genes Neighboring gene phosphodiesterase 6G Neighboring gene tetraspanin 10 Neighboring gene FA core complex associated protein 100 Neighboring gene fascin actin-bundling protein 2, retinal

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_004450479.1 Unplaced Scaffold Reference Oros_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ubiquitin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ubiquitin protein ligase binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in ubiquitin-dependent protein catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
nuclear protein localization protein 4 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Odobenus rosmarus divergens Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Oros_1.0 Primary Assembly

Genomic

  1. NW_004450479.1 Reference Oros_1.0 Primary Assembly

    Range
    1340978..1400900
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_004404494.2 → XP_004404551.1  nuclear protein localization protein 4 homolog

    UniProtKB/TrEMBL
    A0A2U3W8I2
    Conserved Domains (5) summary
    COG5100
    Location:5 → 560
    NPL4; Nuclear pore protein [Nuclear structure]
    sd00029
    Location:584 → 603
    zf-RanBP2; RanBP2-type Zn finger [structural motif]
    pfam05020
    Location:105 → 245
    zf-NPL4; NPL4 family, putative zinc binding region
    pfam05021
    Location:249 → 556
    NPL4; NPL4 family
    pfam11543
    Location:1 → 80
    UN_NPL4; Nuclear pore localization protein NPL4
Nucleotide Protein
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