U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

SMOC2 SPARC related modular calcium binding 2 [ Odobenus rosmarus divergens (Pacific walrus) ]

Gene ID: 101377497, updated on 8-Mar-2024

Summary

Go to the top of the page Help
Gene symbol
SMOC2
Gene description
SPARC related modular calcium binding 2
Gene type
protein coding
RefSeq status
MODEL
Organism
Odobenus rosmarus divergens (sub-species: divergens)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Pinnipedia; Odobenidae; Odobenus
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Location:
chromosome: Un
Exon count:
13
Annotation release Status Assembly Chr Location
101 current Oros_1.0 (GCF_000321225.1) Unplaced Scaffold NW_004450406.1 (2842962..2994937)

NW_004450406.1Genomic Context describing neighboring genes Neighboring gene kinesin family member 25 Neighboring gene dishevelled binding antagonist of beta catenin 2

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NW_004450406.1 Unplaced Scaffold Reference Oros_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables extracellular matrix binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables heparin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in extracellular matrix organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in basement membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in extracellular space IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
SPARC-related modular calcium-binding protein 2

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Odobenus rosmarus divergens Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Oros_1.0 Primary Assembly

Genomic

  1. NW_004450406.1 Reference Oros_1.0 Primary Assembly

    Range
    2842962..2994937
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_004401555.1 → XP_004401612.1  SPARC-related modular calcium-binding protein 2 isoform X2

    UniProtKB/TrEMBL
    A0A2U3W139
    Conserved Domains (4) summary
    smart00280
    Location:39 → 84
    KAZAL; Kazal type serine protease inhibitors
    cd00191
    Location:215 → 281
    TY; Thyroglobulin type I repeats.; The N-terminal region of human thyroglobulin contains 11 type-1 repeats TY repeats are proposed to be inhibitors of cysteine proteases
    cd00252
    Location:351 → 423
    SPARC_EC; SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate ...
    pfam16597
    Location:154 → 212
    Thyroglob_assoc; Thyroglobulin_1 repeat associated disordered domain

  2. XM_012562773.1 → XP_012418227.1  SPARC-related modular calcium-binding protein 2 isoform X1

    Conserved Domains (4) summary
    smart00280
    Location:39 → 84
    KAZAL; Kazal type serine protease inhibitors
    cd00191
    Location:215 → 281
    TY; Thyroglobulin type I repeats.; The N-terminal region of human thyroglobulin contains 11 type-1 repeats TY repeats are proposed to be inhibitors of cysteine proteases
    cd00252
    Location:351 → 419
    SPARC_EC; SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate ...
    pfam16597
    Location:154 → 212
    Thyroglob_assoc; Thyroglobulin_1 repeat associated disordered domain
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.