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LOC101343567 opsin, longwave 563 nm [ Trichechus manatus latirostris (Florida manatee) ]

Gene ID: 101343567, updated on 1-Feb-2024

Summary

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Gene symbol
LOC101343567
Gene description
opsin, longwave 563 nm
See related
EnsemblRapid:ENSTMLG00000016033
Gene type
protein coding
RefSeq status
MODEL
Organism
Trichechus manatus latirostris (sub-species: latirostris)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Afrotheria; Sirenia; Trichechidae; Trichechus
Also known as
OPN1LW
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Genomic context

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Location:
chromosome: Un
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2024_01 current TriManLat1.0 (GCF_000243295.1) Unplaced Scaffold NW_004444245.1 (839374..854110)

NW_004444245.1Genomic Context describing neighboring genes Neighboring gene interleukin 1 receptor associated kinase 1 Neighboring gene methyl-CpG binding protein 2 Neighboring gene testis expressed 28 Neighboring gene transketolase like 1 Neighboring gene emerin

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_004444245 Unplaced Scaffold Reference TriManLat1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables G protein-coupled photoreceptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in G protein-coupled receptor signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cellular response to light stimulus IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in phototransduction IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in visual perception IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in photoreceptor outer segment IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
opsin, longwave 563 nm
Names
opsin 1 (cone pigments), long-wave-sensitive

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000243295.1-RS_2024_01

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference TriManLat1.0 Primary Assembly

Genomic

  1. NW_004444245.1 Reference TriManLat1.0 Primary Assembly

    Range
    839374..854110
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_004390580.1 → XP_004390637.1  opsin, longwave 563 nm

    See identical proteins and their annotated locations for XP_004390637.1

    UniProtKB/TrEMBL
    A0A2Y9EBI5, Q864C8
    Related
    ENSTMLP00000022449.1, ENSTMLT00000024070.1
    Conserved Domains (1) summary
    pfam00001
    Location:71 → 322
    7tm_1; 7 transmembrane receptor (rhodopsin family)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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