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LRFN1 leucine rich repeat and fibronectin type III domain containing 1 [ Tursiops truncatus (common bottlenose dolphin) ]

Gene ID: 101323076, updated on 8-Mar-2024

Summary

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Gene symbol
LRFN1
Gene description
leucine rich repeat and fibronectin type III domain containing 1
See related
EnsemblRapid:ENSTTRG00000003551
Gene type
protein coding
RefSeq status
MODEL
Organism
Tursiops truncatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha; Cetacea; Odontoceti; Delphinidae; Tursiops
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 19
Exon count:
4
Annotation release Status Assembly Chr Location
102 current mTurTru1.mat.Y (GCF_011762595.1) 19 NC_047052.1 (45716198..45728444, complement)
101 previous assembly NIST Tur_tru v1 (GCF_001922835.1) Unplaced Scaffold NW_017843553.1 (474871..481574)

Chromosome 19 - NC_047052.1Genomic Context describing neighboring genes Neighboring gene interferon lambda-3-like Neighboring gene interferon lambda-1-like Neighboring gene glia maturation factor gamma Neighboring gene sterile alpha motif domain containing 4B

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
leucine-rich repeat and fibronectin type III domain-containing protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Tursiops truncatus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mTurTru1.mat.Y Primary Assembly

Genomic

  1. NC_047052.1 Reference mTurTru1.mat.Y Primary Assembly

    Range
    45716198..45728444 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_033844763.1 → XP_033700654.1  leucine-rich repeat and fibronectin type III domain-containing protein 1 isoform X2

    UniProtKB/TrEMBL
    A0A6J3QEN0
    Conserved Domains (6) summary
    smart00082
    Location:252 → 284
    LRRCT; Leucine rich repeat C-terminal domain
    cd00063
    Location:426 → 500
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    sd00033
    Location:67 → 90
    LRR_RI; leucine-rich repeat [structural motif]
    cd00096
    Location:299 → 302
    Ig; Ig strand A [structural motif]
    cd21340
    Location:70 → 226
    PPP1R42; protein phosphatase 1 regulatory subunit 42
    cl11960
    Location:299 → 387
    Ig; Immunoglobulin domain

  2. XM_033844765.1 → XP_033700656.1  leucine-rich repeat and fibronectin type III domain-containing protein 1 isoform X2

    UniProtKB/TrEMBL
    A0A6J3QEN0
    Conserved Domains (6) summary
    smart00082
    Location:252 → 284
    LRRCT; Leucine rich repeat C-terminal domain
    cd00063
    Location:426 → 500
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    sd00033
    Location:67 → 90
    LRR_RI; leucine-rich repeat [structural motif]
    cd00096
    Location:299 → 302
    Ig; Ig strand A [structural motif]
    cd21340
    Location:70 → 226
    PPP1R42; protein phosphatase 1 regulatory subunit 42
    cl11960
    Location:299 → 387
    Ig; Immunoglobulin domain

  3. XM_033844768.1 → XP_033700659.1  leucine-rich repeat and fibronectin type III domain-containing protein 1 isoform X2

    UniProtKB/TrEMBL
    A0A6J3QEN0
    Conserved Domains (6) summary
    smart00082
    Location:252 → 284
    LRRCT; Leucine rich repeat C-terminal domain
    cd00063
    Location:426 → 500
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    sd00033
    Location:67 → 90
    LRR_RI; leucine-rich repeat [structural motif]
    cd00096
    Location:299 → 302
    Ig; Ig strand A [structural motif]
    cd21340
    Location:70 → 226
    PPP1R42; protein phosphatase 1 regulatory subunit 42
    cl11960
    Location:299 → 387
    Ig; Immunoglobulin domain

  4. XM_033844767.1 → XP_033700658.1  leucine-rich repeat and fibronectin type III domain-containing protein 1 isoform X2

    UniProtKB/TrEMBL
    A0A6J3QEN0
    Conserved Domains (6) summary
    smart00082
    Location:252 → 284
    LRRCT; Leucine rich repeat C-terminal domain
    cd00063
    Location:426 → 500
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    sd00033
    Location:67 → 90
    LRR_RI; leucine-rich repeat [structural motif]
    cd00096
    Location:299 → 302
    Ig; Ig strand A [structural motif]
    cd21340
    Location:70 → 226
    PPP1R42; protein phosphatase 1 regulatory subunit 42
    cl11960
    Location:299 → 387
    Ig; Immunoglobulin domain

  5. XM_033844764.1 → XP_033700655.1  leucine-rich repeat and fibronectin type III domain-containing protein 1 isoform X2

    UniProtKB/TrEMBL
    A0A6J3QEN0
    Conserved Domains (6) summary
    smart00082
    Location:252 → 284
    LRRCT; Leucine rich repeat C-terminal domain
    cd00063
    Location:426 → 500
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    sd00033
    Location:67 → 90
    LRR_RI; leucine-rich repeat [structural motif]
    cd00096
    Location:299 → 302
    Ig; Ig strand A [structural motif]
    cd21340
    Location:70 → 226
    PPP1R42; protein phosphatase 1 regulatory subunit 42
    cl11960
    Location:299 → 387
    Ig; Immunoglobulin domain

  6. XM_004325297.3 → XP_004325345.2  leucine-rich repeat and fibronectin type III domain-containing protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A2U3V7V6
    Related
    ENSTTRP00000003327.2, ENSTTRT00000003549.2
    Conserved Domains (5) summary
    smart00082
    Location:311 → 343
    LRRCT; Leucine rich repeat C-terminal domain
    sd00033
    Location:126 → 149
    LRR_RI; leucine-rich repeat [structural motif]
    pfam00041
    Location:485 → 559
    fn3; Fibronectin type III domain
    pfam13855
    Location:124 → 184
    LRR_8; Leucine rich repeat
    cl11960
    Location:373 → 446
    Ig; Immunoglobulin domain
Nucleotide Protein
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