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CALCOCO2 calcium binding and coiled-coil domain 2 [ Orcinus orca (killer whale) ]

Gene ID: 101286656, updated on 8-Mar-2024

Summary

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Gene symbol
CALCOCO2
Gene description
calcium binding and coiled-coil domain 2
See related
EnsemblRapid:ENSOORG00010019312
Gene type
protein coding
RefSeq status
MODEL
Organism
Orcinus orca
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha; Cetacea; Odontoceti; Delphinidae; Orcinus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 19
Exon count:
14
Annotation release Status Assembly Chr Location
RS_2023_02 current mOrcOrc1.1 (GCF_937001465.1) 19 NC_064577.1 (44626487..44649243)

Chromosome 19 - NC_064577.1Genomic Context describing neighboring genes Neighboring gene homeobox B13 Neighboring gene tubulin tyrosine ligase like 6 Neighboring gene uncharacterized LOC125962193 Neighboring gene uncharacterized LOC117197760 Neighboring gene small nucleolar RNA U89 Neighboring gene ATP synthase membrane subunit c locus 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_064577.1 Chromosome 19 Reference mOrcOrc1.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in positive regulation of autophagosome maturation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in xenophagy IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in PML body IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in autophagosome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
calcium-binding and coiled-coil domain-containing protein 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_937001465.1-RS_2023_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mOrcOrc1.1 Primary Assembly

Genomic

  1. NC_064577.1 Reference mOrcOrc1.1 Primary Assembly

    Range
    44626487..44649243
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_049702542.1 → XP_049558499.1  calcium-binding and coiled-coil domain-containing protein 2 isoform X2

  2. XM_004282658.4 → XP_004282706.1  calcium-binding and coiled-coil domain-containing protein 2 isoform X1

    Related
    ENSOORP00010025495.1, ENSOORT00010028932.1
    Conserved Domains (3) summary
    COG1196
    Location:139 → 348
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    pfam17751
    Location:23 → 125
    SKICH; SKICH domain
    cl41777
    Location:422 → 448
    Zn-C2H2_CALCOCO1_TAX1BP1_like; autophagy receptor zinc finger-C2H2 domain found in calcium-binding and coiled-coil domain-containing proteins, TAX1BP1 and similar proteins

  3. XM_033411129.2 → XP_033267020.1  calcium-binding and coiled-coil domain-containing protein 2 isoform X1

    Related
    ENSOORP00010025493.1, ENSOORT00010028930.1
    Conserved Domains (3) summary
    COG1196
    Location:139 → 348
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    pfam17751
    Location:23 → 125
    SKICH; SKICH domain
    cl41777
    Location:422 → 448
    Zn-C2H2_CALCOCO1_TAX1BP1_like; autophagy receptor zinc finger-C2H2 domain found in calcium-binding and coiled-coil domain-containing proteins, TAX1BP1 and similar proteins

  4. XM_049702543.1 → XP_049558500.1  calcium-binding and coiled-coil domain-containing protein 2 isoform X3

Nucleotide Protein
Heading Accession and Version

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