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TARDBP TAR DNA binding protein [ Orcinus orca (killer whale) ]

Gene ID: 101283086, updated on 8-Mar-2024

Summary

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Gene symbol
TARDBP
Gene description
TAR DNA binding protein
See related
EnsemblRapid:ENSOORG00010019339
Gene type
protein coding
RefSeq status
MODEL
Organism
Orcinus orca
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha; Cetacea; Odontoceti; Delphinidae; Orcinus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 1
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2023_02 current mOrcOrc1.1 (GCF_937001465.1) 1 NC_064559.1 (204298024..204308792, complement)

Chromosome 1 - NC_064559.1Genomic Context describing neighboring genes Neighboring gene spermidine synthase Neighboring gene MBL associated serine protease 2 Neighboring gene chromosome 1 C1orf127 homolog Neighboring gene 60S ribosomal protein L5-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_064559.1 Chromosome 1 Reference mOrcOrc1.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of gene expression IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
TAR DNA-binding protein 43

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_937001465.1-RS_2023_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mOrcOrc1.1 Primary Assembly

Genomic

  1. NC_064559.1 Reference mOrcOrc1.1 Primary Assembly

    Range
    204298024..204308792 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_049712644.1 → XP_049568601.1  TAR DNA-binding protein 43

    Related
    ENSOORP00010025535.1, ENSOORT00010028973.1

  2. XM_012533980.3 → XP_012389434.1  TAR DNA-binding protein 43

    See identical proteins and their annotated locations for XP_012389434.1

    Conserved Domains (3) summary
    pfam18694
    Location:4 → 77
    TDP43_N; Transactive response DNA-binding protein N-terminal domain
    cd12321
    Location:105 → 178
    RRM1_TDP43; RNA recognition motif 1 (RRM1) found in TAR DNA-binding protein 43 (TDP-43) and similar proteins
    cd12322
    Location:191 → 261
    RRM2_TDP43; RNA recognition motif 2 (RRM2) found in TAR DNA-binding protein 43 (TDP-43) and similar proteins

RNA

  1. XR_004484673.2 RNA Sequence

  2. XR_004484672.2 RNA Sequence

  3. XR_004484671.2 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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