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RPF2 ribosome production factor 2 homolog [ Orcinus orca (killer whale) ]

Gene ID: 101281210, updated on 8-Mar-2024

Summary

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Gene symbol
RPF2
Gene description
ribosome production factor 2 homolog
See related
EnsemblRapid:ENSOORG00010004382
Gene type
protein coding
RefSeq status
MODEL
Organism
Orcinus orca
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha; Cetacea; Odontoceti; Delphinidae; Orcinus
Orthologs
human mouse all
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Genomic context

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See RPF2 in Genome Data Viewer
Location:
chromosome: 12
Exon count:
11
Annotation release Status Assembly Chr Location
RS_2023_02 current mOrcOrc1.1 (GCF_937001465.1) 12 NC_064570.1 (47936186..47973501, complement)

Chromosome 12 - NC_064570.1Genomic Context describing neighboring genes Neighboring gene solute carrier family 16 member 10 Neighboring gene mitochondrial dimethyladenosine transferase 1-like Neighboring gene uncharacterized LOC117199370 Neighboring gene ubiquitin-conjugating enzyme E2 D3-like Neighboring gene general transcription factor IIIC subunit 6 Neighboring gene adenosylmethionine decarboxylase 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_064570.1 Chromosome 12 Reference mOrcOrc1.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables rRNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in ribosomal large subunit assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleolus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ribosome production factor 2 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_937001465.1-RS_2023_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mOrcOrc1.1 Primary Assembly

Genomic

  1. NC_064570.1 Reference mOrcOrc1.1 Primary Assembly

    Range
    47936186..47973501 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_033418650.2 → XP_033274541.1  ribosome production factor 2 homolog isoform X1

    Conserved Domains (1) summary
    cl00935
    Location:6 → 304
    Brix; Brix domain

  2. XM_004264719.4 → XP_004264767.1  ribosome production factor 2 homolog isoform X2

    Related
    ENSOORP00010005096.1, ENSOORT00010006323.1
    Conserved Domains (1) summary
    cl00935
    Location:6 → 297
    Brix; Brix domain

  3. XM_033418651.2 → XP_033274542.1  ribosome production factor 2 homolog isoform X3

    Conserved Domains (1) summary
    cl00935
    Location:1 → 271
    Brix; Brix domain
Nucleotide Protein
Heading Accession and Version

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