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PCDH1 protocadherin 1 [ Orcinus orca (killer whale) ]

Gene ID: 101279922, updated on 8-Mar-2024

Summary

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Gene symbol
PCDH1
Gene description
protocadherin 1
See related
EnsemblRapid:ENSOORG00010020152
Gene type
protein coding
RefSeq status
MODEL
Organism
Orcinus orca
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha; Cetacea; Odontoceti; Delphinidae; Orcinus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 3
Exon count:
8
Annotation release Status Assembly Chr Location
RS_2023_02 current mOrcOrc1.1 (GCF_937001465.1) 3 NC_064561.1 (66887239..66913140)

Chromosome 3 - NC_064561.1Genomic Context describing neighboring genes Neighboring gene ring finger protein 14 Neighboring gene protocadherin 12 Neighboring gene DAP3 binding cell death enhancer 1 Neighboring gene ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 3 Neighboring gene FCH and double SH3 domains 1 Neighboring gene RELT like 2

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_064561.1 Chromosome 3 Reference mOrcOrc1.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in homophilic cell adhesion via plasma membrane adhesion molecules IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protocadherin-1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_937001465.1-RS_2023_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mOrcOrc1.1 Primary Assembly

Genomic

  1. NC_064561.1 Reference mOrcOrc1.1 Primary Assembly

    Range
    66887239..66913140
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_004280230.4 → XP_004280278.1  protocadherin-1 isoform X1

    See identical proteins and their annotated locations for XP_004280278.1

    Related
    ENSOORP00010026770.1, ENSOORT00010030281.1
    Conserved Domains (3) summary
    cd11304
    Location:512 → 608
    Cadherin_repeat; Cadherin tandem repeat domain
    pfam08266
    Location:60 → 138
    Cadherin_2; Cadherin-like
    pfam08374
    Location:815 → 1029
    Protocadherin

  2. XM_033406570.2 → XP_033262461.1  protocadherin-1 isoform X3

    Conserved Domains (3) summary
    cd11304
    Location:512 → 608
    Cadherin_repeat; Cadherin tandem repeat domain
    pfam08266
    Location:60 → 138
    Cadherin_2; Cadherin-like
    pfam08374
    Location:815 → 1029
    Protocadherin

  3. XM_033406571.2 → XP_033262462.1  protocadherin-1 isoform X4

    Conserved Domains (3) summary
    cd11304
    Location:512 → 608
    Cadherin_repeat; Cadherin tandem repeat domain
    pfam08266
    Location:60 → 138
    Cadherin_2; Cadherin-like
    pfam08374
    Location:815 → 1029
    Protocadherin

  4. XM_033406569.2 → XP_033262460.1  protocadherin-1 isoform X2

    Conserved Domains (3) summary
    cd11304
    Location:490 → 586
    Cadherin_repeat; Cadherin tandem repeat domain
    pfam08266
    Location:38 → 116
    Cadherin_2; Cadherin-like
    pfam08374
    Location:793 → 1007
    Protocadherin
Nucleotide Protein
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