U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

ATG16L1 autophagy related 16 like 1 [ Orcinus orca (killer whale) ]

Gene ID: 101278758, updated on 8-Mar-2024

Summary

Go to the top of the page Help
Gene symbol
ATG16L1
Gene description
autophagy related 16 like 1
See related
EnsemblRapid:ENSOORG00010018295
Gene type
protein coding
RefSeq status
MODEL
Organism
Orcinus orca
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha; Cetacea; Odontoceti; Delphinidae; Orcinus
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Location:
chromosome: 7
Exon count:
19
Annotation release Status Assembly Chr Location
RS_2023_02 current mOrcOrc1.1 (GCF_937001465.1) 7 NC_064565.1 (113924679..113971414)

Chromosome 7 - NC_064565.1Genomic Context describing neighboring genes Neighboring gene neuraminidase 2 Neighboring gene inositol polyphosphate-5-phosphatase D Neighboring gene calmodulin-binding transcription activator 1-like Neighboring gene 60S ribosomal protein L17-like Neighboring gene small Cajal body-specific RNA 6 Neighboring gene small Cajal body-specific RNA 6 Neighboring gene S-antigen visual arrestin Neighboring gene diacylglycerol kinase delta Neighboring gene uncharacterized LOC117200767

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_064565.1 Chromosome 7 Reference mOrcOrc1.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in autophagosome assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in negative stranded viral RNA replication IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in autophagosome membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
autophagy-related protein 16-1

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: GCF_937001465.1-RS_2023_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mOrcOrc1.1 Primary Assembly

Genomic

  1. NC_064565.1 Reference mOrcOrc1.1 Primary Assembly

    Range
    113924679..113971414
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_033425109.2 → XP_033281000.1  autophagy-related protein 16-1 isoform X1

    Related
    ENSOORP00010024078.1, ENSOORT00010027416.1
    Conserved Domains (3) summary
    cd00200
    Location:331 → 620
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    sd00039
    Location:342 → 379
    7WD40; WD40 repeat [structural motif]
    pfam08614
    Location:30 → 205
    ATG16; Autophagy protein 16 (ATG16)

  2. XM_012531911.3 → XP_012387365.1  autophagy-related protein 16-1 isoform X2

    Related
    ENSOORP00010024082.1, ENSOORT00010027420.1
    Conserved Domains (5) summary
    COG2319
    Location:314 → 572
    WD40; WD40 repeat [General function prediction only]
    cd00200
    Location:315 → 604
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    pfam08614
    Location:30 → 205
    ATG16; Autophagy protein 16 (ATG16)
    pfam13874
    Location:82 → 181
    Nup54; Nucleoporin complex subunit 54
    sd00039
    Location:326 → 363
    7WD40; WD40 repeat [structural motif]

  3. XM_049711942.1 → XP_049567899.1  autophagy-related protein 16-1 isoform X4

    Related
    ENSOORP00010024088.1, ENSOORT00010027426.1

  4. XM_004262572.3 → XP_004262620.1  autophagy-related protein 16-1 isoform X3

    Related
    ENSOORP00010024085.1, ENSOORT00010027424.1
    Conserved Domains (5) summary
    COG2319
    Location:295 → 553
    WD40; WD40 repeat [General function prediction only]
    cd00200
    Location:296 → 585
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    pfam08614
    Location:30 → 205
    ATG16; Autophagy protein 16 (ATG16)
    pfam13874
    Location:82 → 181
    Nup54; Nucleoporin complex subunit 54
    sd00039
    Location:307 → 344
    7WD40; WD40 repeat [structural motif]
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.