The following sections contain reference sequences that belong to a specific genome build. Explain

This section includes genomic Reference Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate assemblies. Model RNAs and proteins are also reported here.

Reference mOrcOrc1.1 Primary Assembly

Genomic

1. NC_064565.1 Reference mOrcOrc1.1 Primary Assembly

   Range

   117287155..117373355 complement

   Download

   GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

1. XM_033424518.2 → XP_033280409.2  collagen alpha-3(VI) chain isoform X1

2. XM_033424529.2 → XP_033280420.2  collagen alpha-3(VI) chain isoform X3

3. XM_033424543.2 → XP_033280434.1  collagen alpha-3(VI) chain isoform X5

   Conserved Domains (8) summary

   smart00060
   Location:2808 → 2878

   FN3; Fibronectin type 3 domain

   smart00327
   Location:1602 → 1767

   VWA; von Willebrand factor (vWF) type A domain

   cd00109
   Location:2927 → 2980

   KU; BPTI/Kunitz family of serine protease inhibitors; Structure is a disulfide rich alpha+beta fold. BPTI (bovine pancreatic trypsin inhibitor) is an extensively studied model structure.

   cd01481
   Location:208 → 372

   vWA_collagen_alpha3-VI-like; VWA_collagen alpha 3(VI) like: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than ...

   pfam07382
   Location:2648 → 2818

   HC2; Histone H1-like nucleoprotein HC2

   pfam00092
   Location:1403 → 1575

   VWA; von Willebrand factor type A domain

   pfam01391
   Location:2075 → 2129

   Collagen; Collagen triple helix repeat (20 copies)

   cl00057
   Location:402 → 566

   vWFA; Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of ...

4. XM_033424548.2 → XP_033280439.1  collagen alpha-3(VI) chain isoform X7

   Conserved Domains (8) summary

   smart00060
   Location:2608 → 2678

   FN3; Fibronectin type 3 domain

   smart00327
   Location:1402 → 1567

   VWA; von Willebrand factor (vWF) type A domain

   cd00109
   Location:2727 → 2780

   KU; BPTI/Kunitz family of serine protease inhibitors; Structure is a disulfide rich alpha+beta fold. BPTI (bovine pancreatic trypsin inhibitor) is an extensively studied model structure.

   cd01481
   Location:208 → 372

   vWA_collagen_alpha3-VI-like; VWA_collagen alpha 3(VI) like: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than ...

   pfam07382
   Location:2448 → 2618

   HC2; Histone H1-like nucleoprotein HC2

   pfam00092
   Location:1203 → 1375

   VWA; von Willebrand factor type A domain

   pfam01391
   Location:1875 → 1929

   Collagen; Collagen triple helix repeat (20 copies)

   cl00057
   Location:592 → 755

   vWFA; Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of ...

5. XM_033424522.2 → XP_033280413.1  collagen alpha-3(VI) chain isoform X2

   Conserved Domains (8) summary

   smart00060
   Location:3088 → 3158

   FN3; Fibronectin type 3 domain

   smart00327
   Location:1882 → 2047

   VWA; von Willebrand factor (vWF) type A domain

   cd00109
   Location:3207 → 3260

   KU; BPTI/Kunitz family of serine protease inhibitors; Structure is a disulfide rich alpha+beta fold. BPTI (bovine pancreatic trypsin inhibitor) is an extensively studied model structure.

   cd01481
   Location:488 → 652

   vWA_collagen_alpha3-VI-like; VWA_collagen alpha 3(VI) like: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than ...

   pfam07382
   Location:2928 → 3098

   HC2; Histone H1-like nucleoprotein HC2

   pfam00092
   Location:1683 → 1855

   VWA; von Willebrand factor type A domain

   pfam01391
   Location:2355 → 2409

   Collagen; Collagen triple helix repeat (20 copies)

   cl00057
   Location:1276 → 1438

   vWFA; Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of ...

6. XM_049712370.1 → XP_049568327.1  collagen alpha-3(VI) chain isoform X6

7. XM_049712369.1 → XP_049568326.1  collagen alpha-3(VI) chain isoform X4