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ARS1 R1-MYB type transcription factor ARS1 [ Solanum lycopersicum (tomato) ]

Gene ID: 101257705, updated on 9-Nov-2023

Summary

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Gene symbol
ARS1
Gene description
R1-MYB type transcription factor ARS1
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Solanum lycopersicum
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Solanum subgen. Lycopersicon
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Genomic context

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Location:
chromosome: 1
Exon count:
8
Annotation release Status Assembly Chr Location
103 current SL3.0 (GCF_000188115.4) 1 NC_015438.3 (86276475..86284302, complement)
102 previous assembly SL2.50 (GCF_000188115.3) 1 NC_015438.2 (86401333..86409181, complement)

Chromosome 1 - NC_015438.3Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC101247558 Neighboring gene uncharacterized LOC112941841 Neighboring gene MADS-box transcription factor 47-like Neighboring gene C-terminal binding protein AN Neighboring gene uncharacterized LOC101266760

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The tomato mutant ars1 (altered response to salt stress 1) identifies an R1-type MYB transcription factor involved in stomatal closure under salt acclimation. Campos JF, et al. Plant Biotechnol J, 2016 Jun. PMID 26578112
  2. Large-scale analysis of full-length cDNAs from the tomato (Solanum lycopersicum) cultivar Micro-Tom, a reference system for the Solanaceae genomics. Aoki K, et al. BMC Genomics, 2010 Mar 30. PMID 20350329, Free PMC Article

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. The ARS1 tomato gene contributes to reducing transpirational water loss under salt stress.
    Title: The tomato mutant ars1 (altered response to salt stress 1) identifies an R1-type MYB transcription factor involved in stomatal closure under salt acclimation.
Submit: New GeneRIF Correction

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
R1-MYB type transcription factor ARS1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001353764.1 → NP_001340693.1  R1-MYB type transcription factor ARS1

    Status: VALIDATED

    Source sequence(s)
    AEKE03003137, AK328260
    UniProtKB/TrEMBL
    A0A3Q7EM19
    Conserved Domains (1) summary
    TIGR01557
    Location:66 → 116
    myb_SHAQKYF; myb-like DNA-binding domain, SHAQKYF class

RefSeqs of Annotated Genomes: Solanum lycopersicum Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference SL3.0 Primary Assembly

Genomic

  1. NC_015438.3 Reference SL3.0 Primary Assembly

    Range
    86276475..86284302 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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