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LOC101250281 AP2-like ethylene-responsive transcription factor At1g16060 [ Solanum lycopersicum (tomato) ]

Gene ID: 101250281, updated on 9-Nov-2023

Summary

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Gene symbol
LOC101250281
Gene description
AP2-like ethylene-responsive transcription factor At1g16060
Gene type
protein coding
RefSeq status
MODEL
Organism
Solanum lycopersicum
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Solanum subgen. Lycopersicon
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Genomic context

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Location:
chromosome: 12
Exon count:
8
Annotation release Status Assembly Chr Location
103 current SL3.0 (GCF_000188115.4) 12 NC_015449.3 (3501079..3504642)
102 previous assembly SL2.50 (GCF_000188115.3) 12 NC_015449.2 (3501040..3504574)

Chromosome 12 - NC_015449.3Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC101249994 Neighboring gene heptahelical transmembrane protein 2-like Neighboring gene E3 ubiquitin ligase BIG BROTHER-related-like Neighboring gene oxysterol-binding protein-related protein 1C-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
AP2-like ethylene-responsive transcription factor At1g16060

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Solanum lycopersicum Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference SL3.0 Primary Assembly

Genomic

  1. NC_015449.3 Reference SL3.0 Primary Assembly

    Range
    3501079..3504642
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_026028673.1 → XP_025884458.1  AP2-like ethylene-responsive transcription factor At1g16060

    UniProtKB/TrEMBL
    A0A3Q7J3M7
    Conserved Domains (2) summary
    smart00380
    Location:47 → 119
    AP2; DNA-binding domain in plant proteins such as APETALA2 and EREBPs
    cd00018
    Location:148 → 209
    AP2; DNA-binding domain found in transcription regulators in plants such as APETALA2 and EREBP (ethylene responsive element binding protein). In EREBPs the domain specifically binds to the 11bp GCC box of the ethylene response element (ERE), a promotor ...
Nucleotide Protein
Heading Accession and Version

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