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LOC101249925 putative B3 domain-containing protein At5g58280 [ Solanum lycopersicum (tomato) ]

Gene ID: 101249925, updated on 9-Nov-2023

Summary

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Gene symbol
LOC101249925
Gene description
putative B3 domain-containing protein At5g58280
Gene type
protein coding
RefSeq status
MODEL
Organism
Solanum lycopersicum
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Solanum subgen. Lycopersicon
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Genomic context

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See LOC101249925 in Genome Data Viewer
Location:
chromosome: 6
Exon count:
8
Annotation release Status Assembly Chr Location
103 current SL3.0 (GCF_000188115.4) 6 NC_015443.3 (1514314..1518576, complement)
102 previous assembly SL2.50 (GCF_000188115.3) 6 NC_015443.2 (1515695..1519957, complement)

Chromosome 6 - NC_015443.3Genomic Context describing neighboring genes Neighboring gene ubiquitin-conjugating enzyme E2-17 kDa Neighboring gene 60S ribosomal protein L10 Neighboring gene cytochrome b-c1 complex subunit 8-like Neighboring gene microRNA MIR319b

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
putative B3 domain-containing protein At5g58280

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Solanum lycopersicum Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference SL3.0 Primary Assembly

Genomic

  1. NC_015443.3 Reference SL3.0 Primary Assembly

    Range
    1514314..1518576 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_004240385.3 → XP_004240433.1  putative B3 domain-containing protein At5g58280

    UniProtKB/TrEMBL
    K4C3D4
    Conserved Domains (1) summary
    cd10017
    Location:139 → 230
    B3_DNA; Plant-specific B3-DNA binding domain

  2. XM_019214406.2 → XP_019069951.1  putative B3 domain-containing protein At5g58280

    UniProtKB/TrEMBL
    K4C3D4
Nucleotide Protein
Heading Accession and Version

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