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LOC101245758 bZIP transcription factor 60 [ Solanum lycopersicum (tomato) ]

Gene ID: 101245758, updated on 9-Nov-2023

Summary

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Gene symbol
LOC101245758
Gene description
bZIP transcription factor 60
Gene type
protein coding
RefSeq status
MODEL
Organism
Solanum lycopersicum
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Solanum subgen. Lycopersicon
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Genomic context

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Location:
chromosome: 4
Exon count:
3
Annotation release Status Assembly Chr Location
103 current SL3.0 (GCF_000188115.4) 4 NC_015441.3 (66477409..66479752, complement)
102 previous assembly SL2.50 (GCF_000188115.3) 4 NC_015441.2 (66391316..66393654, complement)

Chromosome 4 - NC_015441.3Genomic Context describing neighboring genes Neighboring gene pentatricopeptide repeat-containing protein Neighboring gene pyrophosphate--fructose 6-phosphate 1-phosphotransferase subunit alpha Neighboring gene mitotic spindle checkpoint protein BUBR1 Neighboring gene calvin cycle protein CP12-3, chloroplastic

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Large-scale analysis of full-length cDNAs from the tomato (Solanum lycopersicum) cultivar Micro-Tom, a reference system for the Solanaceae genomics. Aoki K, et al. BMC Genomics, 2010 Mar 30. PMID 20350329, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
bZIP transcription factor 60

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Solanum lycopersicum Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference SL3.0 Primary Assembly

Genomic

  1. NC_015441.3 Reference SL3.0 Primary Assembly

    Range
    66477409..66479752 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_004238421.3 → XP_004238469.1  bZIP transcription factor 60

    UniProtKB/TrEMBL
    A0A3Q7G8U7
    Conserved Domains (1) summary
    cd14704
    Location:125 → 176
    bZIP_HY5-like; Basic leucine zipper (bZIP) domain of Plant Elongated/Long Hypocotyl5 (HY5)-like transcription factors and similar proteins: a DNA-binding and dimerization domain
Nucleotide Protein
Heading Accession and Version

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