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LOC101209196 transcription factor bHLH84 [ Cucumis sativus (cucumber) ]

Gene ID: 101209196, updated on 14-Dec-2023

Summary

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Gene symbol
LOC101209196
Gene description
transcription factor bHLH84
Locus tag
Csa_012622
Gene type
protein coding
RefSeq status
MODEL
Organism
Cucumis sativus
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Genomic context

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Location:
chromosome: 4
Exon count:
5
Annotation release Status Assembly Chr Location
102 current Cucumber_9930_V3 (GCF_000004075.3) 4 NC_026658.2 (24696679..24698731)
101 previous assembly ASM407v2 (GCF_000004075.2) 4 NC_026658.1 (21547715..21549353)

Chromosome 4 - NC_026658.2Genomic Context describing neighboring genes Neighboring gene LOB domain-containing protein 39 Neighboring gene zinc finger protein ZAT10 Neighboring gene uncharacterized LOC101209442 Neighboring gene activating signal cointegrator 1 complex subunit 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein dimerization activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transcription factor bHLH84

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Cucumis sativus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Cucumber_9930_V3 Primary Assembly

Genomic

  1. NC_026658.2 Reference Cucumber_9930_V3 Primary Assembly

    Range
    24696679..24698731
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_004141354.3 → XP_004141402.1  transcription factor bHLH84

    See identical proteins and their annotated locations for XP_004141402.1

    UniProtKB/TrEMBL
    A0A0A0L533
    Conserved Domains (1) summary
    cd00083
    Location:252 → 297
    HLH; Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long. A DNA-binding basic region is followed by two alpha-helices separated by a variable loop region; HLH forms homo- and heterodimers, ...
Nucleotide Protein
Heading Accession and Version

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