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auts2a activator of transcription and developmental regulator AUTS2 a [ Oryzias latipes (Japanese medaka) ]

Gene ID: 101174450, updated on 8-Mar-2024

Summary

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Gene symbol
auts2a
Gene description
activator of transcription and developmental regulator AUTS2 a
See related
EnsemblRapid:ENSORLG00000012440
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryzias latipes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Beloniformes; Adrianichthyidae; Oryziinae; Oryzias
Also known as
auts2
Orthologs
human zebrafish all
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Genomic context

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See auts2a in Genome Data Viewer
Location:
chromosome: 14
Exon count:
21
Annotation release Status Assembly Chr Location
103 current ASM223467v1 (GCF_002234675.1) 14 NC_019872.2 (22210327..22566571)
102 previous assembly ASM31367v1 (GCF_000313675.1) 14 NC_019872.1 (23699976..24058031)

Chromosome 14 - NC_019872.2Genomic Context describing neighboring genes Neighboring gene mediator complex subunit 13a Neighboring gene integrator complex subunit 2 Neighboring gene CXADR Ig-like cell adhesion molecule Neighboring gene B-cell translocation gene 3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. auts2 Features and Expression Are Highly Conserved during Evolution Despite Different Evolutionary Fates Following Whole Genome Duplication. Merdrignac C, et al. Cells, 2022 Aug 30. PMID 36078102, Free PMC Article
  2. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. auts2 Features and Expression Are Highly Conserved during Evolution Despite Different Evolutionary Fates Following Whole Genome Duplication.
    Title: auts2 Features and Expression Are Highly Conserved during Evolution Despite Different Evolutionary Fates Following Whole Genome Duplication.
Submit: New GeneRIF Correction

General gene information

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Homology

General protein information

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Preferred Names
autism susceptibility gene 2 protein
Names
AUTS2, activator of transcription and developmental regulator
autism susceptibility candidate 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oryzias latipes Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM223467v1 Primary Assembly

Genomic

  1. NC_019872.2 Reference ASM223467v1 Primary Assembly

    Range
    22210327..22566571
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011483793.3 → XP_011482095.1  autism susceptibility gene 2 protein isoform X4

    UniProtKB/TrEMBL
    A0A3P9KZQ5
    Related
    ENSORLP00000044777.2, ENSORLT00000029483.2
    Conserved Domains (1) summary
    pfam15336
    Location:660 → 880
    Auts2; Autism susceptibility gene 2 protein

  2. XM_011483792.3 → XP_011482094.1  autism susceptibility gene 2 protein isoform X3

    UniProtKB/TrEMBL
    A0A3P9KZQ5
    Conserved Domains (1) summary
    pfam15336
    Location:660 → 882
    Auts2; Autism susceptibility gene 2 protein

  3. XM_011483795.3 → XP_011482097.1  autism susceptibility gene 2 protein isoform X6

    UniProtKB/TrEMBL
    A0A3B3HTS9, A0A3P9IKN4
    Related
    ENSORLP00000035217.2, ENSORLT00000027680.2
    Conserved Domains (1) summary
    pfam15336
    Location:645 → 868
    Auts2; Autism susceptibility gene 2 protein

  4. XM_011483794.3 → XP_011482096.1  autism susceptibility gene 2 protein isoform X5

    UniProtKB/TrEMBL
    A0A3P9KZQ5
    Conserved Domains (1) summary
    pfam15336
    Location:653 → 876
    Auts2; Autism susceptibility gene 2 protein

  5. XM_011483796.3 → XP_011482098.1  autism susceptibility gene 2 protein isoform X7

    UniProtKB/TrEMBL
    A0A3P9IKN4
    Conserved Domains (1) summary
    pfam15336
    Location:638 → 861
    Auts2; Autism susceptibility gene 2 protein

  6. XM_011483791.3 → XP_011482093.1  autism susceptibility gene 2 protein isoform X2

    UniProtKB/TrEMBL
    A0A3P9KZQ5
    Conserved Domains (1) summary
    pfam15336
    Location:659 → 882
    Auts2; Autism susceptibility gene 2 protein

  7. XM_020709076.2 → XP_020564735.1  autism susceptibility gene 2 protein isoform X1

    UniProtKB/TrEMBL
    A0A3B3IM96, A0A3P9KZQ5
    Conserved Domains (1) summary
    pfam15336
    Location:666 → 869
    Auts2; Autism susceptibility gene 2 protein

  8. XM_023962505.1 → XP_023818273.1  autism susceptibility gene 2 protein isoform X1

    UniProtKB/TrEMBL
    A0A3B3IM96, A0A3P9KZQ5
    Conserved Domains (1) summary
    pfam15336
    Location:666 → 869
    Auts2; Autism susceptibility gene 2 protein

  9. XM_011483798.3 → XP_011482100.1  autism susceptibility gene 2 protein isoform X8

    See identical proteins and their annotated locations for XP_011482100.1

    UniProtKB/TrEMBL
    A0A3P9JS27
    Related
    ENSORLP00000062064.1, ENSORLT00000055459.1
    Conserved Domains (1) summary
    pfam15336
    Location:455 → 678
    Auts2; Autism susceptibility gene 2 protein

  10. XM_011483800.3 → XP_011482102.1  autism susceptibility gene 2 protein isoform X9

    UniProtKB/TrEMBL
    A0A3P9JS27, H2MAM1
    Related
    ENSORLP00000015576.4, ENSORLT00000015577.4
    Conserved Domains (1) summary
    pfam15336
    Location:441 → 664
    Auts2; Autism susceptibility gene 2 protein
Nucleotide Protein
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