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trim8b tripartite motif containing 8b [ Oryzias latipes (Japanese medaka) ]

Gene ID: 101172537, updated on 8-Mar-2024

Summary

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Gene symbol
trim8b
Gene description
tripartite motif containing 8b
See related
EnsemblRapid:ENSORLG00000010965
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryzias latipes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Beloniformes; Adrianichthyidae; Oryziinae; Oryzias
Also known as
trim8
Orthologs
zebrafish all
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Genomic context

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Location:
chromosome: 19
Exon count:
5
Annotation release Status Assembly Chr Location
103 current ASM223467v1 (GCF_002234675.1) 19 NC_019877.2 (13289389..13300152, complement)
102 previous assembly ASM31367v1 (GCF_000313675.1) 19 NC_019877.1 (12119775..12130515, complement)

Chromosome 19 - NC_019877.2Genomic Context describing neighboring genes Neighboring gene TIMP metallopeptidase inhibitor 2a Neighboring gene sideroflexin 2 Neighboring gene ADP ribosylation factor like GTPase 3b Neighboring gene U5 spliceosomal RNA Neighboring gene U5 spliceosomal RNA

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
E3 ubiquitin-protein ligase TRIM8
Names
tripartite motif containing 8

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oryzias latipes Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM223467v1 Primary Assembly

Genomic

  1. NC_019877.2 Reference ASM223467v1 Primary Assembly

    Range
    13289389..13300152 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_004080475.4 → XP_004080523.2  E3 ubiquitin-protein ligase TRIM8

    UniProtKB/TrEMBL
    A0A3P9K0Z1, H2M5M0
    Related
    ENSORLP00000050754.1, ENSORLT00000104956.1
    Conserved Domains (2) summary
    cl17238
    Location:25 → 65
    RING; RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in ...
    cl23720
    Location:205 → 312
    RILP-like; Rab interacting lysosomal protein-like 1 and 2 (Rilpl1 and Rilpl2)
Nucleotide Protein
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