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s100b S100 calcium binding protein, beta (neural) [ Oryzias latipes (Japanese medaka) ]

Gene ID: 101168682, updated on 8-Mar-2024

Summary

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Gene symbol
s100b
Gene description
S100 calcium binding protein, beta (neural)
See related
EnsemblRapid:ENSORLG00000028907
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryzias latipes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Beloniformes; Adrianichthyidae; Oryziinae; Oryzias
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: 2
Exon count:
3
Annotation release Status Assembly Chr Location
103 current ASM223467v1 (GCF_002234675.1) 2 NC_019860.2 (3717141..3718074)
102 previous assembly ASM31367v1 (GCF_000313675.1) 2 NC_019860.1 (2310138..2311072)

Chromosome 2 - NC_019860.2Genomic Context describing neighboring genes Neighboring gene ADP-ribosylation factor-like protein 4C Neighboring gene SH3 domain-binding protein 4-A Neighboring gene cell adhesion molecule 4-like Neighboring gene uncharacterized LOC110016073 Neighboring gene aryl hydrocarbon receptor

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RAGE receptor binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables S100 protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in positive regulation of canonical NF-kappaB signal transduction IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of cell population proliferation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in extracellular space IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protein S100-B
Names
S100 calcium binding protein B

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oryzias latipes Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM223467v1 Primary Assembly

Genomic

  1. NC_019860.2 Reference ASM223467v1 Primary Assembly

    Range
    3717141..3718074
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_004066370.4 → XP_004066418.1  protein S100-B

    See identical proteins and their annotated locations for XP_004066418.1

    UniProtKB/TrEMBL
    A0A3B3HQ64, A0A3P9KQV6
    Related
    ENSORLP00000033880.1, ENSORLT00000042213.2
    Conserved Domains (1) summary
    cl08302
    Location:2 → 89
    EFh; EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to ...

  2. XM_011481419.3 → XP_011479721.1  protein S100-B

    See identical proteins and their annotated locations for XP_011479721.1

    UniProtKB/TrEMBL
    A0A3B3HQ64, A0A3P9KQV6
    Conserved Domains (1) summary
    cl08302
    Location:2 → 89
    EFh; EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to ...

  3. XM_004066371.4 → XP_004066419.1  protein S100-B

    See identical proteins and their annotated locations for XP_004066419.1

    UniProtKB/TrEMBL
    A0A3B3HQ64, A0A3P9KQV6
    Conserved Domains (1) summary
    cl08302
    Location:2 → 89
    EFh; EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to ...
Nucleotide Protein
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