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tprn taperin [ Oryzias latipes (Japanese medaka) ]

Gene ID: 101167383, updated on 8-Mar-2024

Summary

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Gene symbol
tprn
Gene description
taperin
See related
EnsemblRapid:ENSORLG00000013750
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryzias latipes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Beloniformes; Adrianichthyidae; Oryziinae; Oryzias
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: 12
Exon count:
4
Annotation release Status Assembly Chr Location
103 current ASM223467v1 (GCF_002234675.1) 12 NC_019870.2 (25832826..25852975)
102 previous assembly ASM31367v1 (GCF_000313675.1) 12 NC_019870.1 (25838090..25857925)

Chromosome 12 - NC_019870.2Genomic Context describing neighboring genes Neighboring gene aminolevulinate dehydratase Neighboring gene transmembrane protein 203 Neighboring gene uncharacterized LOC111948350 Neighboring gene Sjogren syndrome nuclear autoantigen 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables phosphatase binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
taperin

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oryzias latipes Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM223467v1 Primary Assembly

Genomic

  1. NC_019870.2 Reference ASM223467v1 Primary Assembly

    Range
    25832826..25852975
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011482058.3 → XP_011480360.1  taperin

    UniProtKB/TrEMBL
    A0A3P9IEP1, H2MF73
    Related
    ENSORLP00000017244.2, ENSORLT00000017245.3
    Conserved Domains (3) summary
    PHA03160
    Location:517 → 595
    PHA03160; hypothetical protein; Provisional
    pfam13914
    Location:585 → 721
    Phostensin; Phostensin PP1-binding and SH3-binding region
    pfam13916
    Location:17 → 167
    Phostensin_N; PP1-regulatory protein, Phostensin N-terminal
Nucleotide Protein
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