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mamdc2 MAM domain containing 2 [ Oryzias latipes (Japanese medaka) ]

Gene ID: 101166891, updated on 9-Nov-2023

Summary

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Gene symbol
mamdc2
Gene description
MAM domain containing 2
See related
EnsemblRapid:ENSORLG00000013510
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryzias latipes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Beloniformes; Adrianichthyidae; Oryziinae; Oryzias
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Genomic context

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See mamdc2 in Genome Data Viewer
Location:
chromosome: 12
Exon count:
15
Annotation release Status Assembly Chr Location
103 current ASM223467v1 (GCF_002234675.1) 12 NC_019870.2 (25508261..25527625)
102 previous assembly ASM31367v1 (GCF_000313675.1) 12 NC_019870.1 (25508568..25527363)

Chromosome 12 - NC_019870.2Genomic Context describing neighboring genes Neighboring gene tight junction protein 2a (zona occludens 2) Neighboring gene amyloid beta (A4) precursor protein-binding, family A, member 1b Neighboring gene uncharacterized LOC105355305 Neighboring gene uncharacterized LOC110016114 Neighboring gene solute carrier family 30 member 5 Neighboring gene annexin A1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
MAM domain-containing protein 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oryzias latipes Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM223467v1 Primary Assembly

Genomic

  1. NC_019870.2 Reference ASM223467v1 Primary Assembly

    Range
    25508261..25527625
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011482053.3 → XP_011480355.1  MAM domain-containing protein 2

    UniProtKB/TrEMBL
    A0A3P9IGI6, H2MED5
    Related
    ENSORLP00000016940.2, ENSORLT00000016941.3
    Conserved Domains (2) summary
    cd06263
    Location:520 → 674
    MAM; Meprin, A5 protein, and protein tyrosine phosphatase Mu (MAM) domain. MAM is an extracellular domain which mediates protein-protein interactions and is found in a diverse set of proteins, many of which are known to function in cell adhesion. Members ...
    pfam00629
    Location:520 → 675
    MAM; MAM domain, meprin/A5/mu
Nucleotide Protein
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Molecular Biology Databases
Research Materials