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lin7a lin-7 homolog A (C. elegans) [ Oryzias latipes (Japanese medaka) ]

Gene ID: 101166430, updated on 8-Mar-2024

Summary

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Gene symbol
lin7a
Gene description
lin-7 homolog A (C. elegans)
See related
EnsemblRapid:ENSORLG00000030538
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryzias latipes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Beloniformes; Adrianichthyidae; Oryziinae; Oryzias
Orthologs
human zebrafish all
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Genomic context

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See lin7a in Genome Data Viewer
Location:
chromosome: 23
Exon count:
6
Annotation release Status Assembly Chr Location
103 current ASM223467v1 (GCF_002234675.1) 23 NC_019881.2 (19133712..19166607)
102 previous assembly ASM31367v1 (GCF_000313675.1) 23 NC_019881.1 (19833354..19865758)

Chromosome 23 - NC_019881.2Genomic Context describing neighboring genes Neighboring gene CAP-Gly domain-containing linker protein 1-like Neighboring gene PTPRF interacting protein alpha 2 Neighboring gene acyl-CoA synthetase short chain family member 3 Neighboring gene myogenic factor 5 Neighboring gene myogenic factor 6

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables L27 domain binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in maintenance of epithelial cell apical/basal polarity IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in neurotransmitter secretion IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein localization to basolateral plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of MPP7-DLG1-LIN7 complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in basolateral plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cell-cell junction IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in synapse IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protein lin-7 homolog A
Names
lin-7 homolog A, crumbs cell polarity complex component

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oryzias latipes Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM223467v1 Primary Assembly

Genomic

  1. NC_019881.2 Reference ASM223467v1 Primary Assembly

    Range
    19133712..19166607
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_004083199.3 → XP_004083247.1  protein lin-7 homolog A isoform X2

    UniProtKB/TrEMBL
    A0A3B3HQ30, A0A3P9J3F6, A0A3P9J3N9
    Related
    ENSORLP00000065672.1, ENSORLT00000074290.1
    Conserved Domains (2) summary
    smart00569
    Location:16 → 68
    L27; domain in receptor targeting proteins Lin-2 and Lin-7
    cd00992
    Location:91 → 172
    PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...

  2. XM_020714070.1 → XP_020569729.1  protein lin-7 homolog A isoform X1

    UniProtKB/TrEMBL
    A0A3P9J3F6
    Related
    ENSORLP00000033845.2, ENSORLT00000038261.2
    Conserved Domains (2) summary
    smart00569
    Location:16 → 68
    L27; domain in receptor targeting proteins Lin-2 and Lin-7
    cd00992
    Location:91 → 172
    PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
Nucleotide Protein
Heading Accession and Version

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