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ash1l ash1 (absent, small, or homeotic)-like (Drosophila) [ Oryzias latipes (Japanese medaka) ]

Gene ID: 101161417, updated on 8-Mar-2024

Summary

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Gene symbol
ash1l
Gene description
ash1 (absent, small, or homeotic)-like (Drosophila)
See related
EnsemblRapid:ENSORLG00000000611
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryzias latipes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Beloniformes; Adrianichthyidae; Oryziinae; Oryzias
Orthologs
zebrafish all
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Genomic context

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Location:
chromosome: 11
Exon count:
28
Annotation release Status Assembly Chr Location
103 current ASM223467v1 (GCF_002234675.1) 11 NC_019869.2 (1277237..1309583, complement)
102 previous assembly ASM31367v1 (GCF_000313675.1) 11 NC_019869.1 (647056..679139, complement)

Chromosome 11 - NC_019869.2Genomic Context describing neighboring genes Neighboring gene CD209 antigen-like protein E Neighboring gene small conductance calcium-activated potassium channel protein 1 Neighboring gene small nucleolar RNA SNORA35 Neighboring gene ribosomal protein S27 Neighboring gene secretory carrier membrane protein 3 Neighboring gene uncharacterized LOC110013568

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables chromatin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables histone methyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
histone-lysine N-methyltransferase ASH1L

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oryzias latipes Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM223467v1 Primary Assembly

Genomic

  1. NC_019869.2 Reference ASM223467v1 Primary Assembly

    Range
    1277237..1309583 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_020706876.2 → XP_020562535.1  histone-lysine N-methyltransferase ASH1L isoform X1

    UniProtKB/TrEMBL
    A0A3P9KXX2
    Conserved Domains (6) summary
    cd05525
    Location:2332 → 2437
    Bromo_ASH1; Bromodomain; ASH1_like sub-family. ASH1 (absent, small, or homeotic 1) is a member of the trithorax-group in Drosophila melanogaster, an epigenetic transcriptional regulator of HOX genes. Drosophila ASH1 has been shown to methylate specific lysines in ...
    smart00570
    Location:1994 → 2045
    AWS; associated with SET domains
    smart00317
    Location:2048 → 2169
    SET; SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain
    cd04717
    Location:2555 → 2694
    BAH_polybromo; BAH, or Bromo Adjacent Homology domain, as present in polybromo and yeast RSC1/2. The human polybromo protein (BAF180) is a component of the SWI/SNF chromatin-remodeling complex PBAF. It is thought that polybromo participates in transcriptional ...
    cd15548
    Location:2481 → 2523
    PHD_ASH1L; PHD finger found in histone-lysine N-methyltransferase ASH1L
    cl25836
    Location:507 → 708
    Retinal; Retinal protein

  2. XM_020706877.2 → XP_020562536.1  histone-lysine N-methyltransferase ASH1L isoform X1

    UniProtKB/TrEMBL
    A0A3P9KXX2
    Conserved Domains (6) summary
    cd05525
    Location:2332 → 2437
    Bromo_ASH1; Bromodomain; ASH1_like sub-family. ASH1 (absent, small, or homeotic 1) is a member of the trithorax-group in Drosophila melanogaster, an epigenetic transcriptional regulator of HOX genes. Drosophila ASH1 has been shown to methylate specific lysines in ...
    smart00570
    Location:1994 → 2045
    AWS; associated with SET domains
    smart00317
    Location:2048 → 2169
    SET; SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain
    cd04717
    Location:2555 → 2694
    BAH_polybromo; BAH, or Bromo Adjacent Homology domain, as present in polybromo and yeast RSC1/2. The human polybromo protein (BAF180) is a component of the SWI/SNF chromatin-remodeling complex PBAF. It is thought that polybromo participates in transcriptional ...
    cd15548
    Location:2481 → 2523
    PHD_ASH1L; PHD finger found in histone-lysine N-methyltransferase ASH1L
    cl25836
    Location:507 → 708
    Retinal; Retinal protein

  3. XM_011480634.3 → XP_011478936.1  histone-lysine N-methyltransferase ASH1L isoform X2

    UniProtKB/TrEMBL
    A0A3P9KXX2, H2L4R0
    Conserved Domains (6) summary
    cd05525
    Location:2332 → 2437
    Bromo_ASH1; Bromodomain; ASH1_like sub-family. ASH1 (absent, small, or homeotic 1) is a member of the trithorax-group in Drosophila melanogaster, an epigenetic transcriptional regulator of HOX genes. Drosophila ASH1 has been shown to methylate specific lysines in ...
    smart00570
    Location:1994 → 2045
    AWS; associated with SET domains
    smart00317
    Location:2048 → 2169
    SET; SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain
    COG5076
    Location:2208 → 2424
    COG5076; Transcription factor involved in chromatin remodeling, contains bromodomain [Chromatin structure and dynamics / Transcription]
    cd04717
    Location:2555 → 2694
    BAH_polybromo; BAH, or Bromo Adjacent Homology domain, as present in polybromo and yeast RSC1/2. The human polybromo protein (BAF180) is a component of the SWI/SNF chromatin-remodeling complex PBAF. It is thought that polybromo participates in transcriptional ...
    cd15548
    Location:2481 → 2523
    PHD_ASH1L; PHD finger found in histone-lysine N-methyltransferase ASH1L

  4. XM_020706878.2 → XP_020562537.1  histone-lysine N-methyltransferase ASH1L isoform X1

    UniProtKB/TrEMBL
    A0A3P9KXX2
    Related
    ENSORLP00000000758.5, ENSORLT00000000758.5
    Conserved Domains (6) summary
    cd05525
    Location:2332 → 2437
    Bromo_ASH1; Bromodomain; ASH1_like sub-family. ASH1 (absent, small, or homeotic 1) is a member of the trithorax-group in Drosophila melanogaster, an epigenetic transcriptional regulator of HOX genes. Drosophila ASH1 has been shown to methylate specific lysines in ...
    smart00570
    Location:1994 → 2045
    AWS; associated with SET domains
    smart00317
    Location:2048 → 2169
    SET; SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain
    cd04717
    Location:2555 → 2694
    BAH_polybromo; BAH, or Bromo Adjacent Homology domain, as present in polybromo and yeast RSC1/2. The human polybromo protein (BAF180) is a component of the SWI/SNF chromatin-remodeling complex PBAF. It is thought that polybromo participates in transcriptional ...
    cd15548
    Location:2481 → 2523
    PHD_ASH1L; PHD finger found in histone-lysine N-methyltransferase ASH1L
    cl25836
    Location:507 → 708
    Retinal; Retinal protein
Nucleotide Protein
Heading Accession and Version

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