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col9a1 collagen type IX alpha 1 chain [ Oryzias latipes (Japanese medaka) ]

Gene ID: 101156602, updated on 7-Jun-2022

Summary

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Gene symbol
col9a1
Gene description
collagen type IX alpha 1 chain
See related
EnsemblRapid:ENSORLG00000010431
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryzias latipes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Beloniformes; Adrianichthyidae; Oryziinae; Oryzias
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Genomic context

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Location:
chromosome: 15
Exon count:
32
Annotation release Status Assembly Chr Location
103 current ASM223467v1 (GCF_002234675.1) 15 NC_019873.2 (25143067..25157627, complement)
102 previous assembly ASM31367v1 (GCF_000313675.1) 15 NC_019873.1 (24519868..24534593, complement)

Chromosome 15 - NC_019873.2Genomic Context describing neighboring genes Neighboring gene LMBR1 domain containing 1 Neighboring gene collagen type XIX alpha 1 chain Neighboring gene family with sequence similarity 135 member A Neighboring gene uncharacterized LOC101173650

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
collagen alpha-1(IX) chain

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oryzias latipes Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM223467v1 Primary Assembly

Genomic

  1. NC_019873.2 Reference ASM223467v1 Primary Assembly

    Range
    25143067..25157627 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011484564.3 → XP_011482866.1  collagen alpha-1(IX) chain

    Related
    ENSORLP00000081492.1, ENSORLT00000075839.1
    Conserved Domains (1) summary
    pfam01391
    Location:44 → 103
    Collagen; Collagen triple helix repeat (20 copies)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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