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cbln1 cerebellin 1 precursor [ Oryzias latipes (Japanese medaka) ]

Gene ID: 101156164, updated on 12-Sep-2024

Summary

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Gene symbol
cbln1
Gene description
cerebellin 1 precursor
See related
EnsemblRapid:ENSORLG00000013593
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryzias latipes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Beloniformes; Adrianichthyidae; Oryziinae; Oryzias
Orthologs
zebrafish all
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Genomic context

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See cbln1 in Genome Data Viewer
Location:
chromosome: 6
Exon count:
3
Annotation release Status Assembly Chr Location
103 current ASM223467v1 (GCF_002234675.1) 6 NC_019864.2 (25540290..25575596, complement)
102 previous assembly ASM31367v1 (GCF_000313675.1) 6 NC_019864.1 (20692617..20725453, complement)

Chromosome 6 - NC_019864.2Genomic Context describing neighboring genes Neighboring gene siah E3 ubiquitin protein ligase 1 Neighboring gene nedd4 binding protein 1 Neighboring gene uncharacterized LOC111947545 Neighboring gene uncharacterized LOC101156405

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in glutamatergic synapse IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in synaptic cleft IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
cerebellin-1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oryzias latipes Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM223467v1 Primary Assembly

Genomic

  1. NC_019864.2 Reference ASM223467v1 Primary Assembly

    Range
    25540290..25575596 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_004069759.4 → XP_004069807.1  cerebellin-1

    UniProtKB/TrEMBL
    A0A3P9L675, H2MEN6
    Related
    ENSORLP00000017047.2, ENSORLT00000017048.3
    Conserved Domains (1) summary
    cl23878
    Location:53 → 191
    C1q; C1q domain
Nucleotide Protein
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