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trappc6b trafficking protein particle complex subunit 6B [ Oryzias latipes (Japanese medaka) ]

Gene ID: 101155910, updated on 12-Sep-2024

Summary

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Gene symbol
trappc6b
Gene description
trafficking protein particle complex subunit 6B
See related
EnsemblRapid:ENSORLG00000019824
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryzias latipes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Beloniformes; Adrianichthyidae; Oryziinae; Oryzias
Orthologs
zebrafish all
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Genomic context

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Location:
chromosome: 7
Exon count:
6
Annotation release Status Assembly Chr Location
103 current ASM223467v1 (GCF_002234675.1) 7 NC_019865.2 (30838384..30848955, complement)
102 previous assembly ASM31367v1 (GCF_000313675.1) Unplaced Scaffold NW_004095167.1 (1702705..1713247)

Chromosome 7 - NC_019865.2Genomic Context describing neighboring genes Neighboring gene ephrin type-B receptor 2-like Neighboring gene uncharacterized LOC110014709 Neighboring gene putative beta-lactamase-like 1 Neighboring gene forkhead box P3b Neighboring gene G protein-coupled receptor 173

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in endoplasmic reticulum to Golgi vesicle-mediated transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of GTPase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of TRAPP complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cis-Golgi network IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in trans-Golgi network IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
trafficking protein particle complex subunit 6B
Names
trafficking protein particle complex 6b

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oryzias latipes Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM223467v1 Primary Assembly

Genomic

  1. NC_019865.2 Reference ASM223467v1 Primary Assembly

    Range
    30838384..30848955 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_004086354.4 → XP_004086402.1  trafficking protein particle complex subunit 6B

    UniProtKB/TrEMBL
    A0A3B3HWB8, A0A3P9I5H9, A0A3P9LNS5
    Related
    ENSORLP00000035911.1, ENSORLT00000031523.2
    Conserved Domains (1) summary
    cd14944
    Location:4 → 156
    TRAPPC6A_Trs33; Trs33 subunit of the TRAPP complex
Nucleotide Protein
Heading Accession and Version

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