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acer3 alkaline ceramidase 3 [ Oryzias latipes (Japanese medaka) ]

Gene ID: 101155496, updated on 8-Mar-2024

Summary

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Gene symbol
acer3
Gene description
alkaline ceramidase 3
See related
EnsemblRapid:ENSORLG00000027189
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryzias latipes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Beloniformes; Adrianichthyidae; Oryziinae; Oryzias
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: 14
Exon count:
11
Annotation release Status Assembly Chr Location
103 current ASM223467v1 (GCF_002234675.1) 14 NC_019872.2 (30517674..30526829, complement)
102 previous assembly ASM31367v1 (GCF_000313675.1) Unplaced Scaffold NW_004092694.1 (464..2133)

Chromosome 14 - NC_019872.2Genomic Context describing neighboring genes Neighboring gene collagenase 3-like Neighboring gene collagenase Neighboring gene immunoglobulin superfamily, member 5a Neighboring gene glucose-6-phosphate exchanger SLC37A4

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables phytoceramidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in ceramide metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in phytosphingosine biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
alkaline ceramidase 3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oryzias latipes Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM223467v1 Primary Assembly

Genomic

  1. NC_019872.2 Reference ASM223467v1 Primary Assembly

    Range
    30517674..30526829 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_023962622.1 → XP_023818390.1  alkaline ceramidase 3 isoform X2

    UniProtKB/TrEMBL
    A0A3B3IPC8
    Related
    ENSORLP00000030108.2, ENSORLT00000027830.2
    Conserved Domains (1) summary
    pfam05875
    Location:9 → 230
    Ceramidase

  2. XM_023962621.1 → XP_023818389.1  alkaline ceramidase 3 isoform X1

    UniProtKB/TrEMBL
    A0A3B3HFR3, A0A3B3IPC8, A0A3P9LWC9
    Related
    ENSORLP00000028013.2, ENSORLT00000028543.2
    Conserved Domains (1) summary
    pfam05875
    Location:9 → 257
    Ceramidase

  3. XM_023962623.1 → XP_023818391.1  alkaline ceramidase 3 isoform X3

    UniProtKB/TrEMBL
    A0A3B3IPC8
    Conserved Domains (1) summary
    pfam05875
    Location:1 → 209
    Ceramidase
Nucleotide Protein
Heading Accession and Version

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