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VIM vimentin [ Felis catus (domestic cat) ]

Gene ID: 101091951, updated on 8-Mar-2024

Summary

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Gene symbol
VIM
Gene description
vimentin
See related
EnsemblRapid:ENSFCTG00005018543
Gene type
protein coding
RefSeq status
MODEL
Organism
Felis catus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Feliformia; Felidae; Felinae; Felis
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: B4
Exon count:
9
Annotation release Status Assembly Chr Location
105 current F.catus_Fca126_mat1.0 (GCF_018350175.1) B4 NC_058374.1 (16399174..16406602)
104 previous assembly Felis_catus_9.0 (GCF_000181335.3) B4 NC_018729.3 (16166246..16173638)

Chromosome B4 - NC_058374.1Genomic Context describing neighboring genes Neighboring gene cubilin Neighboring gene uncharacterized LOC109501342 Neighboring gene tRNA aspartic acid methyltransferase 1 Neighboring gene sorting nexin-7-like Neighboring gene ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 6 Neighboring gene uncharacterized LOC111561284

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables structural constituent of cytoskeleton IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in intermediate filament organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in axon IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in intermediate filament IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
vimentin

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Felis catus Annotation Release 105 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference F.catus_Fca126_mat1.0 Primary Assembly

Genomic

  1. NC_058374.1 Reference F.catus_Fca126_mat1.0 Primary Assembly

    Range
    16399174..16406602
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003988131.4 → XP_003988180.1  vimentin

    UniProtKB/TrEMBL
    A0A2I2UL84
    Related
    ENSFCTP00005039187.1, ENSFCTT00005053333.1
    Conserved Domains (2) summary
    pfam00038
    Location:102 → 410
    Filament; Intermediate filament protein
    pfam04732
    Location:14 → 101
    Filament_head; Intermediate filament head (DNA binding) region
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases
Research Materials