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COL18A1 collagen type XVIII alpha 1 chain [ Felis catus (domestic cat) ]

Gene ID: 101086496, updated on 8-Mar-2024

Summary

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Gene symbol
COL18A1
Gene description
collagen type XVIII alpha 1 chain
See related
EnsemblRapid:ENSFCTG00005023552
Gene type
protein coding
RefSeq status
MODEL
Organism
Felis catus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Feliformia; Felidae; Felinae; Felis
Orthologs
human mouse all
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Genomic context

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See COL18A1 in Genome Data Viewer
Location:
chromosome: C2
Exon count:
43
Annotation release Status Assembly Chr Location
105 current F.catus_Fca126_mat1.0 (GCF_018350175.1) C2 NC_058376.1 (1260036..1351432, complement)
104 previous assembly Felis_catus_9.0 (GCF_000181335.3) C2 NC_018731.3 (1264773..1356255, complement)

Chromosome C2 - NC_058376.1Genomic Context describing neighboring genes Neighboring gene poly(rC) binding protein 3 Neighboring gene nascent polypeptide-associated complex subunit alpha, muscle-specific form-like Neighboring gene uncharacterized LOC123379834 Neighboring gene uncharacterized LOC123379833 Neighboring gene solute carrier family 19 member 1 Neighboring gene uncharacterized LOC109503260 Neighboring gene uncharacterized LOC109503259 Neighboring gene uncharacterized LOC109503261 Neighboring gene protein O-fucosyltransferase 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in basement membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
collagen alpha-1(XVIII) chain

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Felis catus Annotation Release 105 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference F.catus_Fca126_mat1.0 Primary Assembly

Genomic

  1. NC_058376.1 Reference F.catus_Fca126_mat1.0 Primary Assembly

    Range
    1260036..1351432 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_023238617.2 → XP_023094385.2  collagen alpha-1(XVIII) chain isoform X4

    UniProtKB/TrEMBL
    A0A5F5Y411
    Related
    ENSFCTP00005049973.1, ENSFCTT00005070135.1
    Conserved Domains (2) summary
    cd00247
    Location:1129 → 1300
    Endostatin-like; Endostatin-like domain; the angiogenesis inhibitor endostatin is a C-terminal fragment of collagen XV/XVIII, a proteoglycan/collagen found in vessel walls and basement membranes; this domain has a compact globular fold similar to that of C-type lectins; ...
    cl22861
    Location:41 → 229
    LamG; Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of ...

  2. XM_023238615.2 → XP_023094383.2  collagen alpha-1(XVIII) chain isoform X2

    Conserved Domains (4) summary
    cd07455
    Location:349 → 471
    CRD_Collagen_XVIII; Cysteine-rich domain of the variant 3 of collagen XVIII (V3C18 )
    PHA03247
    Location:35 → 361
    PHA03247; large tegument protein UL36; Provisional
    cd00247
    Location:1562 → 1733
    Endostatin-like; Endostatin-like domain; the angiogenesis inhibitor endostatin is a C-terminal fragment of collagen XV/XVIII, a proteoglycan/collagen found in vessel walls and basement membranes; this domain has a compact globular fold similar to that of C-type lectins; ...
    cl22861
    Location:475 → 663
    LamG; Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of ...

  3. XM_023238614.2 → XP_023094382.2  collagen alpha-1(XVIII) chain isoform X1

    Conserved Domains (4) summary
    cd07455
    Location:349 → 471
    CRD_Collagen_XVIII; Cysteine-rich domain of the variant 3 of collagen XVIII (V3C18 )
    PHA03247
    Location:35 → 361
    PHA03247; large tegument protein UL36; Provisional
    cd00247
    Location:1563 → 1734
    Endostatin-like; Endostatin-like domain; the angiogenesis inhibitor endostatin is a C-terminal fragment of collagen XV/XVIII, a proteoglycan/collagen found in vessel walls and basement membranes; this domain has a compact globular fold similar to that of C-type lectins; ...
    cl22861
    Location:475 → 663
    LamG; Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of ...

  4. XM_023238618.2 → XP_023094386.2  collagen alpha-1(XVIII) chain isoform X5

    UniProtKB/TrEMBL
    A0A5F5Y411
    Related
    ENSFCTP00005049084.1, ENSFCTT00005068489.1
    Conserved Domains (3) summary
    cd00247
    Location:1314 → 1485
    Endostatin-like; Endostatin-like domain; the angiogenesis inhibitor endostatin is a C-terminal fragment of collagen XV/XVIII, a proteoglycan/collagen found in vessel walls and basement membranes; this domain has a compact globular fold similar to that of C-type lectins; ...
    pfam05109
    Location:33 → 205
    Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)
    cl22861
    Location:227 → 415
    LamG; Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of ...

  5. XM_023238616.2 → XP_023094384.2  collagen alpha-1(XVIII) chain isoform X3

    UniProtKB/TrEMBL
    A0A5F5Y411
    Conserved Domains (3) summary
    cd00247
    Location:1315 → 1486
    Endostatin-like; Endostatin-like domain; the angiogenesis inhibitor endostatin is a C-terminal fragment of collagen XV/XVIII, a proteoglycan/collagen found in vessel walls and basement membranes; this domain has a compact globular fold similar to that of C-type lectins; ...
    pfam05109
    Location:33 → 205
    Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)
    cl22861
    Location:227 → 415
    LamG; Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of ...
Nucleotide Protein
Heading Accession and Version

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