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tshz1 teashirt zinc finger homeobox 1 [ Takifugu rubripes (torafugu) ]

Gene ID: 101080193, updated on 21-Dec-2023

Summary

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Gene symbol
tshz1
Gene description
teashirt zinc finger homeobox 1
See related
Ensembl:ENSTRUG00000017496
Gene type
protein coding
RefSeq status
MODEL
Organism
Takifugu rubripes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Tetraodontiformes; Tetradontoidea; Tetraodontidae; Takifugu
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Genomic context

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See tshz1 in Genome Data Viewer
Location:
chromosome: 7
Exon count:
5
Annotation release Status Assembly Chr Location
103 current fTakRub1.2 (GCF_901000725.2) 7 NC_042291.1 (8737856..8769091, complement)
101 previous assembly FUGU5 (GCF_000180615.1) 7 NC_018896.1 (7208445..7242196, complement)

Chromosome 7 - NC_042291.1Genomic Context describing neighboring genes Neighboring gene zinc finger protein 236 Neighboring gene zinc finger protein 516 Neighboring gene zinc binding alcohol dehydrogenase domain containing 2 Neighboring gene zinc finger protein 407 Neighboring gene hyaluronan synthase 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
teashirt homolog 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Takifugu rubripes Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fTakRub1.2 Primary Assembly

Genomic

  1. NC_042291.1 Reference fTakRub1.2 Primary Assembly

    Range
    8737856..8769091 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011605375.2 → XP_011603677.2  teashirt homolog 1

    UniProtKB/TrEMBL
    A0A3B5K7Q6
    Conserved Domains (2) summary
    cd00086
    Location:979 → 1047
    homeodomain; Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.
    sd00020
    Location:289 → 311
    ZF_C2H2; C2H2 Zn finger [structural motif]

  2. XM_029838312.1 → XP_029694172.1  teashirt homolog 1

    UniProtKB/TrEMBL
    A0A3B5K7Q6
    Conserved Domains (2) summary
    cd00086
    Location:979 → 1047
    homeodomain; Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.
    sd00020
    Location:289 → 311
    ZF_C2H2; C2H2 Zn finger [structural motif]

  3. XM_003965941.3 → XP_003965990.3  teashirt homolog 1

    UniProtKB/TrEMBL
    A0A3B5K7Q6
    Related
    ENSTRUP00000053682.2, ENSTRUT00000057248.2
    Conserved Domains (2) summary
    cd00086
    Location:979 → 1047
    homeodomain; Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.
    sd00020
    Location:289 → 311
    ZF_C2H2; C2H2 Zn finger [structural motif]
Nucleotide Protein
Heading Accession and Version

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