U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

rxrgb retinoid X receptor, gamma b [ Takifugu rubripes (torafugu) ]

Gene ID: 101079168, updated on 8-Mar-2024

Summary

Go to the top of the page Help
Gene symbol
rxrgb
Gene description
retinoid X receptor, gamma b
See related
Ensembl:ENSTRUG00000006878
Gene type
protein coding
RefSeq status
MODEL
Organism
Takifugu rubripes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Tetraodontiformes; Tetradontoidea; Tetraodontidae; Takifugu
Orthologs
zebrafish all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Location:
chromosome: 20
Exon count:
11
Annotation release Status Assembly Chr Location
103 current fTakRub1.2 (GCF_901000725.2) 20 NC_042304.1 (8006860..8023802)
101 previous assembly FUGU5 (GCF_000180615.1) 20 NC_018909.1 (5913522..5930417)

Chromosome 20 - NC_042304.1Genomic Context describing neighboring genes Neighboring gene olfactomedin-like 2Ba Neighboring gene activating transcription factor 6 Neighboring gene LIM homeobox transcription factor 1, alpha Neighboring gene selectin P Neighboring gene selectin L

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables nuclear receptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables nuclear steroid receptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables retinoic acid-responsive element binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in anatomical structure development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cell differentiation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in response to retinoic acid IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in retinoic acid receptor signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of RNA polymerase II transcription regulator complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
retinoic acid receptor RXR-gamma-B-like

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Takifugu rubripes Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fTakRub1.2 Primary Assembly

Genomic

  1. NC_042304.1 Reference fTakRub1.2 Primary Assembly

    Range
    8006860..8023802
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011614763.2 → XP_011613065.1  retinoic acid receptor RXR-gamma-B-like isoform X1

    UniProtKB/TrEMBL
    H2SWU2
    Related
    ENSTRUP00000065082.1, ENSTRUT00000083556.1
    Conserved Domains (3) summary
    cd06943
    Location:243 → 451
    NR_LBD_RXR_like; The ligand binding domain of the retinoid X receptor and Ultraspiracle, members of nuclear receptor superfamily
    cd06956
    Location:142 → 223
    NR_DBD_RXR; DNA-binding domain of retinoid X receptor (RXR) is composed of two C4-type zinc fingers
    pfam11825
    Location:32 → 137
    Nuc_recep-AF1; Nuclear/hormone receptor activator site AF-1

  2. XM_011614764.2 → XP_011613066.1  retinoic acid receptor RXR-gamma-B-like isoform X2

    UniProtKB/TrEMBL
    H2SWU2
    Related
    ENSTRUP00000016880.3, ENSTRUT00000016953.3
    Conserved Domains (3) summary
    cd06943
    Location:238 → 446
    NR_LBD_RXR_like; The ligand binding domain of the retinoid X receptor and Ultraspiracle, members of nuclear receptor superfamily
    cd06956
    Location:142 → 218
    NR_DBD_RXR; DNA-binding domain of retinoid X receptor (RXR) is composed of two C4-type zinc fingers
    pfam11825
    Location:32 → 137
    Nuc_recep-AF1; Nuclear/hormone receptor activator site AF-1

  3. XM_029828513.1 → XP_029684373.1  retinoic acid receptor RXR-gamma-B-like isoform X3

    UniProtKB/TrEMBL
    A0A674MVK6
    Related
    ENSTRUP00000084690.1, ENSTRUT00000079441.1
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials