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rfx1b regulatory factor X, 1b (influences HLA class II expression) [ Takifugu rubripes (torafugu) ]

Gene ID: 101078709, updated on 8-Mar-2024

Summary

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Gene symbol
rfx1b
Gene description
regulatory factor X, 1b (influences HLA class II expression)
See related
Ensembl:ENSTRUG00000010058
Gene type
protein coding
RefSeq status
MODEL
Organism
Takifugu rubripes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Tetraodontiformes; Tetradontoidea; Tetraodontidae; Takifugu
Also known as
rfx1
Orthologs
zebrafish all
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Genomic context

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See rfx1b in Genome Data Viewer
Location:
chromosome: 17
Exon count:
20
Annotation release Status Assembly Chr Location
103 current fTakRub1.2 (GCF_901000725.2) 17 NC_042301.1 (3710063..3718305, complement)
101 previous assembly FUGU5 (GCF_000180615.1) 17 NC_018906.1 (2169152..2178007, complement)

Chromosome 17 - NC_042301.1Genomic Context describing neighboring genes Neighboring gene KH-type splicing regulatory protein Neighboring gene DDB1 and CUL4 associated factor 15 Neighboring gene relaxin 3b Neighboring gene transportin 2b Neighboring gene Na(+)/H(+) exchange regulatory cofactor NHE-RF2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
MHC class II regulatory factor RFX1
Names
regulatory factor X1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Takifugu rubripes Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fTakRub1.2 Primary Assembly

Genomic

  1. NC_042301.1 Reference fTakRub1.2 Primary Assembly

    Range
    3710063..3718305 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_029850849.1 → XP_029706709.1  MHC class II regulatory factor RFX1 isoform X2

    UniProtKB/TrEMBL
    A0A674PLH0

  2. XM_011612451.2 → XP_011610753.2  MHC class II regulatory factor RFX1 isoform X1

    UniProtKB/TrEMBL
    A0A674PLH0
    Related
    ENSTRUP00000083235.1, ENSTRUT00000070159.1

  3. XM_011612453.2 → XP_011610755.2  MHC class II regulatory factor RFX1 isoform X1

    UniProtKB/TrEMBL
    A0A674PLH0
    Conserved Domains (2) summary
    pfam02257
    Location:275 → 350
    RFX_DNA_binding; RFX DNA-binding domain
    pfam04589
    Location:110 → 236
    RFX1_trans_act; RFX1 transcription activation region

  4. XM_011612452.2 → XP_011610754.2  MHC class II regulatory factor RFX1 isoform X1

    UniProtKB/TrEMBL
    A0A674PLH0
    Conserved Domains (2) summary
    pfam02257
    Location:275 → 350
    RFX_DNA_binding; RFX DNA-binding domain
    pfam04589
    Location:110 → 236
    RFX1_trans_act; RFX1 transcription activation region
Nucleotide Protein
Heading Accession and Version

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