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rbbp4 RB binding protein 4, chromatin remodeling factor [ Takifugu rubripes (torafugu) ]

Gene ID: 101078368, updated on 21-Dec-2023

Summary

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Gene symbol
rbbp4
Gene description
RB binding protein 4, chromatin remodeling factor
See related
Ensembl:ENSTRUG00000011800
Gene type
protein coding
RefSeq status
MODEL
Organism
Takifugu rubripes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Tetraodontiformes; Tetradontoidea; Tetraodontidae; Takifugu
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Genomic context

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Location:
chromosome: 2
Exon count:
12
Annotation release Status Assembly Chr Location
103 current fTakRub1.2 (GCF_901000725.2) 2 NC_042286.1 (10742134..10745716)
101 previous assembly FUGU5 (GCF_000180615.1) 2 NC_018891.1 (8637924..8641493)

Chromosome 2 - NC_042286.1Genomic Context describing neighboring genes Neighboring gene KH domain containing, RNA binding, signal transduction associated 1a Neighboring gene zinc finger and BTB domain containing 8 opposite strand Neighboring gene syncoilin, intermediate filament protein Neighboring gene uncharacterized protein KIAA1522 homolog

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables histone binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of gene expression IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of ESC/E(Z) complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of NuRD complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
histone-binding protein RBBP4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Takifugu rubripes Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fTakRub1.2 Primary Assembly

Genomic

  1. NC_042286.1 Reference fTakRub1.2 Primary Assembly

    Range
    10742134..10745716
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011616234.2 → XP_011614536.1  histone-binding protein RBBP4 isoform X1

    UniProtKB/TrEMBL
    H2TYP2
    Conserved Domains (3) summary
    sd00039
    Location:131 → 178
    7WD40; WD40 repeat [structural motif]
    pfam12265
    Location:19 → 88
    CAF1C_H4-bd; Histone-binding protein RBBP4 or subunit C of CAF1 complex
    cl29593
    Location:125 → 406
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

  2. XM_003962423.3 → XP_003962472.1  histone-binding protein RBBP4 isoform X2

    UniProtKB/TrEMBL
    A0A674N6J1, H2TYP2
    Related
    ENSTRUP00000068859.1, ENSTRUT00000088957.1
    Conserved Domains (3) summary
    sd00039
    Location:128 → 175
    7WD40; WD40 repeat [structural motif]
    pfam12265
    Location:19 → 88
    CAF1C_H4-bd; Histone-binding protein RBBP4 or subunit C of CAF1 complex
    cl29593
    Location:122 → 403
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
Nucleotide Protein
Heading Accession and Version

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