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khdrbs3 KH domain containing, RNA binding, signal transduction associated 3 [ Takifugu rubripes (torafugu) ]

Gene ID: 101073010, updated on 12-Sep-2024

Summary

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Gene symbol
khdrbs3
Gene description
KH domain containing, RNA binding, signal transduction associated 3
See related
Ensembl:ENSTRUG00000013451
Gene type
protein coding
RefSeq status
MODEL
Organism
Takifugu rubripes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Tetraodontiformes; Tetradontoidea; Tetraodontidae; Takifugu
Orthologs
zebrafish all
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Genomic context

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Location:
chromosome: 12
Exon count:
11
Annotation release Status Assembly Chr Location
103 current fTakRub1.2 (GCF_901000725.2) 12 NC_042296.1 (6413610..6473365, complement)
101 previous assembly FUGU5 (GCF_000180615.1) 12 NC_018901.1 (5519706..5573312, complement)

Chromosome 12 - NC_042296.1Genomic Context describing neighboring genes Neighboring gene collagen alpha-1(IX) chain-like Neighboring gene uncharacterized LOC115251789 Neighboring gene family with sequence similarity 135 member B Neighboring gene uncharacterized LOC115251810 Neighboring gene uncharacterized LOC115251811 Neighboring gene microRNA mir-30d Neighboring gene microRNA mir-30b

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables mRNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of alternative mRNA splicing, via spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
KH domain-containing, RNA-binding, signal transduction-associated protein 3
Names
KH RNA binding domain containing, signal transduction associated 3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Takifugu rubripes Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fTakRub1.2 Primary Assembly

Genomic

  1. NC_042296.1 Reference fTakRub1.2 Primary Assembly

    Range
    6413610..6473365 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003969082.3 → XP_003969131.2  KH domain-containing, RNA-binding, signal transduction-associated protein 3

    UniProtKB/TrEMBL
    H2UBH5
    Related
    ENSTRUP00000034293.3, ENSTRUT00000034419.3
    Conserved Domains (4) summary
    PRK07764
    Location:177 → 278
    PRK07764; DNA polymerase III subunits gamma and tau; Validated
    cd02395
    Location:59 → 178
    SF1_like-KH; Splicing factor 1 (SF1) K homology RNA-binding domain (KH). Splicing factor 1 (SF1) specifically recognizes the intron branch point sequence (BPS) UACUAAC in the pre-mRNA transcripts during spliceosome assembly. We show that the KH-QUA2 region of SF1 ...
    pfam16274
    Location:5 → 54
    Qua1; Qua1 domain
    pfam16568
    Location:261 → 313
    Sam68-YY; Tyrosine-rich domain of Sam68

RNA

  1. XR_003890346.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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