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smtna smoothelin a [ Takifugu rubripes (torafugu) ]

Gene ID: 101071270, updated on 8-Mar-2024

Summary

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Gene symbol
smtna
Gene description
smoothelin a
Gene type
protein coding
RefSeq status
MODEL
Organism
Takifugu rubripes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Tetraodontiformes; Tetradontoidea; Tetraodontidae; Takifugu
Also known as
smtn
Orthologs
zebrafish all
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Genomic context

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Location:
chromosome: 6
Exon count:
9
Annotation release Status Assembly Chr Location
103 current fTakRub1.2 (GCF_901000725.2) 6 NC_042290.1 (11136288..11139842)
101 previous assembly FUGU5 (GCF_000180615.1) 6 NC_018895.1 (8472968..8476069)

Chromosome 6 - NC_042290.1Genomic Context describing neighboring genes Neighboring gene oxysterol binding protein 2a Neighboring gene solute carrier family 35 member E4 Neighboring gene inositol polyphosphate 5-phosphatase K Neighboring gene methionine adenosyltransferase 2Aa

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in actin cytoskeleton organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of filamentous actin IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in microtubule organizing center IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
smoothelin

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Takifugu rubripes Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fTakRub1.2 Primary Assembly

Genomic

  1. NC_042290.1 Reference fTakRub1.2 Primary Assembly

    Range
    11136288..11139842
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_029837489.1 → XP_029693349.1  smoothelin isoform X2

    Conserved Domains (2) summary
    pfam00307
    Location:134 → 235
    CH; Calponin homology (CH) domain
    pfam12510
    Location:15 → 64
    Smoothelin; Smoothelin cytoskeleton protein

  2. XM_011604864.2 → XP_011603166.1  smoothelin isoform X1

    Conserved Domains (2) summary
    pfam00307
    Location:160 → 261
    CH; Calponin homology (CH) domain
    pfam12510
    Location:41 → 90
    Smoothelin; Smoothelin cytoskeleton protein
Nucleotide Protein
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