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rfx3 regulatory factor X, 3 (influences HLA class II expression) [ Takifugu rubripes (torafugu) ]

Gene ID: 101068233, updated on 8-Mar-2024

Summary

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Gene symbol
rfx3
Gene description
regulatory factor X, 3 (influences HLA class II expression)
See related
Ensembl:ENSTRUG00000013889
Gene type
protein coding
RefSeq status
MODEL
Organism
Takifugu rubripes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Tetraodontiformes; Tetradontoidea; Tetraodontidae; Takifugu
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: 6
Exon count:
18
Annotation release Status Assembly Chr Location
103 current fTakRub1.2 (GCF_901000725.2) 6 NC_042290.1 (10463394..10473108, complement)
101 previous assembly FUGU5 (GCF_000180615.1) 6 NC_018895.1 (7790907..7800149, complement)

Chromosome 6 - NC_042290.1Genomic Context describing neighboring genes Neighboring gene bone morphogenetic protein 10-like Neighboring gene mothers against decapentaplegic homolog 4-like Neighboring gene zinc finger protein GLIS3 Neighboring gene unc-5 netrin receptor Cb

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transcription factor RFX3
Names
regulatory factor X3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Takifugu rubripes Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fTakRub1.2 Primary Assembly

Genomic

  1. NC_042290.1 Reference fTakRub1.2 Primary Assembly

    Range
    10463394..10473108 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_029837596.1 → XP_029693456.1  transcription factor RFX3 isoform X3

    Conserved Domains (3) summary
    COG1463
    Location:414 → 568
    MlaD; ABC-type transporter Mla maintaining outer membrane lipid asymmetry, periplasmic component MlaD [Cell wall/membrane/envelope biogenesis]
    pfam02257
    Location:150 → 225
    RFX_DNA_binding; RFX DNA-binding domain
    pfam04589
    Location:4 → 134
    RFX1_trans_act; RFX1 transcription activation region

  2. XM_029837597.1 → XP_029693457.1  transcription factor RFX3 isoform X4

    Conserved Domains (3) summary
    COG1463
    Location:410 → 564
    MlaD; ABC-type transporter Mla maintaining outer membrane lipid asymmetry, periplasmic component MlaD [Cell wall/membrane/envelope biogenesis]
    pfam02257
    Location:149 → 221
    RFX_DNA_binding; RFX DNA-binding domain
    pfam04589
    Location:4 → 102
    RFX1_trans_act; RFX1 transcription activation region

  3. XM_029837595.1 → XP_029693455.1  transcription factor RFX3 isoform X2

    Conserved Domains (3) summary
    COG1463
    Location:438 → 592
    MlaD; ABC-type transporter Mla maintaining outer membrane lipid asymmetry, periplasmic component MlaD [Cell wall/membrane/envelope biogenesis]
    pfam02257
    Location:178 → 250
    RFX_DNA_binding; RFX DNA-binding domain
    pfam04589
    Location:4 → 134
    RFX1_trans_act; RFX1 transcription activation region

  4. XM_003965502.3 → XP_003965551.2  transcription factor RFX3 isoform X1

    Related
    ENSTRUT00000035648.3
    Conserved Domains (3) summary
    COG1463
    Location:439 → 593
    MlaD; ABC-type transporter Mla maintaining outer membrane lipid asymmetry, periplasmic component MlaD [Cell wall/membrane/envelope biogenesis]
    pfam02257
    Location:178 → 250
    RFX_DNA_binding; RFX DNA-binding domain
    pfam04589
    Location:4 → 134
    RFX1_trans_act; RFX1 transcription activation region

  5. XM_029837598.1 → XP_029693458.1  transcription factor RFX3 isoform X5

    Conserved Domains (3) summary
    COG1463
    Location:439 → 593
    MlaD; ABC-type transporter Mla maintaining outer membrane lipid asymmetry, periplasmic component MlaD [Cell wall/membrane/envelope biogenesis]
    pfam02257
    Location:178 → 250
    RFX_DNA_binding; RFX DNA-binding domain
    pfam04589
    Location:4 → 134
    RFX1_trans_act; RFX1 transcription activation region
Nucleotide Protein
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