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msl3 MSL complex subunit 3 [ Takifugu rubripes (torafugu) ]

Gene ID: 101061861, updated on 25-Jan-2024

Summary

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Gene symbol
msl3
Gene description
MSL complex subunit 3
See related
Ensembl:ENSTRUG00000012620
Gene type
protein coding
RefSeq status
MODEL
Organism
Takifugu rubripes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Tetraodontiformes; Tetradontoidea; Tetraodontidae; Takifugu
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Genomic context

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Location:
chromosome: 8
Exon count:
16
Annotation release Status Assembly Chr Location
103 current fTakRub1.2 (GCF_901000725.2) 8 NC_042292.1 (3372900..3381810, complement)
101 previous assembly FUGU5 (GCF_000180615.1) 8 NC_018897.1 (2500471..2509479, complement)

Chromosome 8 - NC_042292.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105416760 Neighboring gene FERM and PDZ domain-containing protein 4-like Neighboring gene Rho GTPase activating protein 6 Neighboring gene uncharacterized LOC115250724 Neighboring gene E3 ubiquitin-protein ligase Midline-1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in chromatin organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of MSL complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of NuA4 histone acetyltransferase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
male-specific lethal 3 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Takifugu rubripes Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fTakRub1.2 Primary Assembly

Genomic

  1. NC_042292.1 Reference fTakRub1.2 Primary Assembly

    Range
    3372900..3381810 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003966422.3 → XP_003966471.1  male-specific lethal 3 homolog isoform X3

    UniProtKB/TrEMBL
    A0A3B5K0B2, H2U4T6
    Related
    ENSTRUP00000031948.2, ENSTRUT00000032071.3
    Conserved Domains (2) summary
    cd18983
    Location:14 → 80
    CBD_MSL3_like; chromo barrel domain of human male-specific lethal complex subunit 3, and similar proteins
    pfam05712
    Location:161 → 529
    MRG

  2. XM_011606124.2 → XP_011604426.1  male-specific lethal 3 homolog isoform X2

    UniProtKB/TrEMBL
    A0A3B5K0B2
    Conserved Domains (4) summary
    COG2826
    Location:1 → 67
    Tra8; Transposase and inactivated derivatives, IS30 family [Mobilome: prophages, transposons]
    pfam05712
    Location:220 → 567
    MRG
    pfam13936
    Location:12 → 44
    HTH_38; Helix-turn-helix domain
    cl28914
    Location:93 → 139
    CD_CSD; CHROMO (CHRromatin Organization Modifier) domains and chromo shadow domains

  3. XM_011606123.2 → XP_011604425.1  male-specific lethal 3 homolog isoform X1

    UniProtKB/TrEMBL
    A0A3B5K0B2
    Conserved Domains (4) summary
    COG2826
    Location:1 → 67
    Tra8; Transposase and inactivated derivatives, IS30 family [Mobilome: prophages, transposons]
    pfam05712
    Location:220 → 588
    MRG
    pfam13936
    Location:12 → 44
    HTH_38; Helix-turn-helix domain
    cl28914
    Location:93 → 139
    CD_CSD; CHROMO (CHRromatin Organization Modifier) domains and chromo shadow domains

  4. XM_029840476.1 → XP_029696336.1  male-specific lethal 3 homolog isoform X1

    UniProtKB/TrEMBL
    A0A3B5K0B2
    Conserved Domains (4) summary
    COG2826
    Location:1 → 67
    Tra8; Transposase and inactivated derivatives, IS30 family [Mobilome: prophages, transposons]
    pfam05712
    Location:220 → 588
    MRG
    pfam13936
    Location:12 → 44
    HTH_38; Helix-turn-helix domain
    cl28914
    Location:93 → 139
    CD_CSD; CHROMO (CHRromatin Organization Modifier) domains and chromo shadow domains
Nucleotide Protein
Heading Accession and Version

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