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ZKSCAN3 zinc finger with KRAB and SCAN domains 3 [ Saimiri boliviensis (Bolivian squirrel monkey) ]

Gene ID: 101033587, updated on 8-Mar-2024

Summary

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Gene symbol
ZKSCAN3
Gene description
zinc finger with KRAB and SCAN domains 3
See related
EnsemblRapid:ENSSBOG00000018831
Gene type
protein coding
RefSeq status
MODEL
Organism
Saimiri boliviensis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Platyrrhini; Cebidae; Saimiriinae; Saimiri
Orthologs
human all
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Genomic context

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Location:
chromosome: Un
Exon count:
16
Annotation release Status Assembly Chr Location
102 current BCM_Sbol_2.0 (GCF_016699345.1) Unplaced Scaffold NW_024100952.1 (27757457..27847481)

NW_024100952.1Genomic Context describing neighboring genes Neighboring gene zinc finger and SCAN domain containing 26 Neighboring gene NFKB activating protein like Neighboring gene piggyBac transposable element derived 1 Neighboring gene zinc finger and SCAN domain containing 31 Neighboring gene cytochrome c-like Neighboring gene zinc finger and SCAN domain containing 12 Neighboring gene zinc finger and SCAN domain containing 23 Neighboring gene transfer RNA threonine (anticodon UGU) Neighboring gene transfer RNA leucine (anticodon AAG)

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_024100952 Unplaced Scaffold Reference BCM_Sbol_2.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
zinc finger protein with KRAB and SCAN domains 3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Saimiri boliviensis Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference BCM_Sbol_2.0 Primary Assembly

Genomic

  1. NW_024100952.1 Reference BCM_Sbol_2.0 Primary Assembly

    Range
    27757457..27847481
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_010332694.2 → XP_010330996.1  zinc finger protein with KRAB and SCAN domains 3

    See identical proteins and their annotated locations for XP_010330996.1

    UniProtKB/TrEMBL
    A0A2K6SAN7
    Related
    ENSSBOP00000004451.1, ENSSBOT00000020872.2
    Conserved Domains (8) summary
    smart00431
    Location:42 → 152
    SCAN; leucine rich region
    smart00349
    Location:214 → 274
    KRAB; krueppel associated box
    COG5048
    Location:368 → 515
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:372 → 392
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:314 → 336
    zf-C2H2; Zinc finger, C2H2 type
    pfam01352
    Location:217 → 252
    KRAB; KRAB box
    pfam02023
    Location:42 → 130
    SCAN; SCAN domain
    pfam13465
    Location:384 → 409
    zf-H2C2_2; Zinc-finger double domain

RNA

  1. XR_005577485.1 RNA Sequence

  2. XR_005577486.1 RNA Sequence

  3. XR_005577482.1 RNA Sequence

  4. XR_005577481.1 RNA Sequence

  5. XR_005577484.1 RNA Sequence

  6. XR_005577483.1 RNA Sequence

  7. XR_005577487.1 RNA Sequence

  8. XR_005577488.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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