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COL28A1 collagen type XXVIII alpha 1 chain [ Saimiri boliviensis (Bolivian squirrel monkey) ]

Gene ID: 101030250, updated on 8-Mar-2024

Summary

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Gene symbol
COL28A1
Gene description
collagen type XXVIII alpha 1 chain
See related
EnsemblRapid:ENSSBOG00000035682
Gene type
protein coding
RefSeq status
MODEL
Organism
Saimiri boliviensis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Platyrrhini; Cebidae; Saimiriinae; Saimiri
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
35
Annotation release Status Assembly Chr Location
102 current BCM_Sbol_2.0 (GCF_016699345.1) Unplaced Scaffold NW_024100925.1 (24649187..24841928)

NW_024100925.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC104652499 Neighboring gene alpha-aminoadipic semialdehyde dehydrogenase-like Neighboring gene meiosis regulator for oocyte development Neighboring gene small ubiquitin-related modifier 2-like Neighboring gene core 1 synthase, glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_024100925 Unplaced Scaffold Reference BCM_Sbol_2.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables serine-type endopeptidase inhibitor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
LOW QUALITY PROTEIN: collagen alpha-1(XXVIII) chain

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Saimiri boliviensis Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference BCM_Sbol_2.0 Primary Assembly

Genomic

  1. NW_024100925.1 Reference BCM_Sbol_2.0 Primary Assembly

    Range
    24649187..24841928
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_010345655.2 → XP_010343957.2  LOW QUALITY PROTEIN: collagen alpha-1(XXVIII) chain

    UniProtKB/TrEMBL
    A0A2K6V530
    Related
    ENSSBOP00000039280.2, ENSSBOT00000056240.2
    Conserved Domains (4) summary
    cd00109
    Location:1181 → 1234
    KU; BPTI/Kunitz family of serine protease inhibitors; Structure is a disulfide rich alpha+beta fold. BPTI (bovine pancreatic trypsin inhibitor) is an extensively studied model structure.
    cd01450
    Location:158 → 320
    vWFA_subfamily_ECM; Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of ...
    pfam00092
    Location:910 → 1085
    VWA; von Willebrand factor type A domain
    pfam01391
    Location:471 → 530
    Collagen; Collagen triple helix repeat (20 copies)
Nucleotide Protein
Heading Accession and Version

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