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TOM1L2 target of myb1 like 2 membrane trafficking protein [ Saimiri boliviensis (Bolivian squirrel monkey) ]

Gene ID: 101029893, updated on 8-Mar-2024

Summary

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Gene symbol
TOM1L2
Gene description
target of myb1 like 2 membrane trafficking protein
See related
EnsemblRapid:ENSSBOG00000031121
Gene type
protein coding
RefSeq status
MODEL
Organism
Saimiri boliviensis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Platyrrhini; Cebidae; Saimiriinae; Saimiri
Orthologs
human mouse all
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Genomic context

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See TOM1L2 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
16
Annotation release Status Assembly Chr Location
102 current BCM_Sbol_2.0 (GCF_016699345.1) Unplaced Scaffold NW_024100930.1 (17583054..17705935, complement)

NW_024100930.1Genomic Context describing neighboring genes Neighboring gene phosphatidylethanolamine N-methyltransferase Neighboring gene retinoic acid induced 1 Neighboring gene sterol regulatory element binding transcription factor 1 Neighboring gene brain protein I3-like Neighboring gene dynein regulatory complex subunit 3 Neighboring gene ATP synthase mitochondrial F1 complex assembly factor 2

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_024100930 Unplaced Scaffold Reference BCM_Sbol_2.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables clathrin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables phosphatidylinositol binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ubiquitin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in signal transduction IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
TOM1-like protein 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Saimiri boliviensis Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference BCM_Sbol_2.0 Primary Assembly

Genomic

  1. NW_024100930.1 Reference BCM_Sbol_2.0 Primary Assembly

    Range
    17583054..17705935 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_010339932.2 → XP_010338234.1  TOM1-like protein 2 isoform X3

    UniProtKB/TrEMBL
    A0A2K6UDT5
    Related
    ENSSBOP00000046821.1, ENSSBOT00000074373.1
    Conserved Domains (2) summary
    cd03565
    Location:12 → 152
    VHS_Tom1; VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of ...
    cd14238
    Location:218 → 309
    GAT_TM1L2; GAT domain found in target of Myb-like protein 2 (Tom1L2)

  2. XM_003929302.3 → XP_003929351.1  TOM1-like protein 2 isoform X2

    UniProtKB/TrEMBL
    A0A2K6UDK6, A0A2K6UDT5
    Related
    ENSSBOP00000029982.1, ENSSBOT00000046867.2
    Conserved Domains (2) summary
    cd03565
    Location:12 → 152
    VHS_Tom1; VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of ...
    cd14238
    Location:218 → 309
    GAT_TM1L2; GAT domain found in target of Myb-like protein 2 (Tom1L2)

  3. XM_010339931.2 → XP_010338233.1  TOM1-like protein 2 isoform X1

    UniProtKB/TrEMBL
    A0A2K6UDI3, A0A2K6UDS9
    Related
    ENSSBOP00000029970.1, ENSSBOT00000046855.2
    Conserved Domains (2) summary
    cd03565
    Location:12 → 152
    VHS_Tom1; VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of ...
    cd14238
    Location:218 → 309
    GAT_TM1L2; GAT domain found in target of Myb-like protein 2 (Tom1L2)
Nucleotide Protein
Heading Accession and Version

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