FRAS1 Fraser extracellular matrix complex subunit 1 [Papio anubis (olive baboon)] - Gene

Summary

Gene symbol: FRAS1
Gene description: Fraser extracellular matrix complex subunit 1
See related: Ensembl:ENSPANG00000021635
Gene type: protein coding
RefSeq status: MODEL
Organism: Papio anubis
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Papio
Orthologs: human mouse all
NEW: Try the new Gene table
Try the new Transcript table

Genomic context

Location:: chromosome: 3

Exon count:: 75

Annotation release	Status	Assembly	Chr	Location
104	current	Panubis1.0 (GCF_008728515.1)	3	NC_044978.1 (121837268..122290964)
103	previous assembly	Panu_3.0 (GCF_000264685.3)	5	NC_018156.2 (62710287..63160544, complement)

Chromosome 3 - NC_044978.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to reference sequence details

Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the page Help

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Submit: New GeneRIF Correction

General gene information

Go to the top of the page Help

Markers

RH15875 (e-PCR)
- UniSTS:65710

SGC32653 (e-PCR)
- UniSTS:45499

SHGC-16556 (e-PCR)
- UniSTS:18406

Homology

NCBI Orthologs

Orthologs from OrthoDB

Gene Ontology Provided by RefSeq

Function	Evidence Code	Pubs
enables protein binding	IEA Inferred from Electronic Annotation more info	PubMed

Process	Evidence Code	Pubs
involved_in cell communication	IEA Inferred from Electronic Annotation more info	PubMed

Component	Evidence Code	Pubs
located_in membrane	IEA Inferred from Electronic Annotation more info	PubMed

General protein information

Go to the top of the page Help

Preferred Names: extracellular matrix protein FRAS1

Names: Fraser syndrome 1

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Papio anubis Annotation Release 104 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Panubis1.0 Primary Assembly

Genomic

NC_044978.1 Reference Panubis1.0 Primary Assembly

Range

121837268..122290964

Download

GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_031664538.1 → XP_031520398.1 extracellular matrix protein FRAS1 isoform X3

Conserved Domains (8) summary

pfam03302
Location:515 → 944

VSP; Giardia variant-specific surface protein

smart00237
Location:2479 → 2574

Calx_beta; Domains in Na-Ca exchangers and integrin-beta4

smart00214
Location:28 → 87

VWC; von Willebrand factor (vWF) type C domain

TIGR00845
Location:2704 → 2971

caca; sodium/calcium exchanger 1

pfam00093
Location:95 → 152

VWC; von Willebrand factor type C domain

pfam14843
Location:412 → 529

GF_recep_IV; Growth factor receptor domain IV

pfam16184
Location:2183 → 2293

Cadherin_3; Cadherin-like

cl02522
Location:2963 → 3057

Calx-beta; Calx-beta domain
XM_031664536.1 → XP_031520396.1 extracellular matrix protein FRAS1 isoform X1

UniProtKB/TrEMBL

A0A2I3LM61

Related

ENSPANP00000024515.2, ENSPANT00000054827.2

Conserved Domains (8) summary

pfam03302
Location:515 → 944

VSP; Giardia variant-specific surface protein

smart00237
Location:2555 → 2650

Calx_beta; Domains in Na-Ca exchangers and integrin-beta4

smart00214
Location:28 → 87

VWC; von Willebrand factor (vWF) type C domain

TIGR00845
Location:2780 → 3047

caca; sodium/calcium exchanger 1

pfam00093
Location:95 → 152

VWC; von Willebrand factor type C domain

pfam14843
Location:412 → 529

GF_recep_IV; Growth factor receptor domain IV

pfam16184
Location:2297 → 2406

Cadherin_3; Cadherin-like

cl02522
Location:3039 → 3133

Calx-beta; Calx-beta domain
XM_031664537.1 → XP_031520397.1 extracellular matrix protein FRAS1 isoform X2

Conserved Domains (8) summary

pfam03302
Location:515 → 944

VSP; Giardia variant-specific surface protein

smart00237
Location:2554 → 2649

Calx_beta; Domains in Na-Ca exchangers and integrin-beta4

smart00214
Location:28 → 87

VWC; von Willebrand factor (vWF) type C domain

TIGR00845
Location:2779 → 3046

caca; sodium/calcium exchanger 1

pfam00093
Location:95 → 152

VWC; von Willebrand factor type C domain

pfam14843
Location:412 → 529

GF_recep_IV; Growth factor receptor domain IV

pfam16184
Location:2296 → 2405

Cadherin_3; Cadherin-like

cl02522
Location:3038 → 3132

Calx-beta; Calx-beta domain
XM_031664539.1 → XP_031520399.1 extracellular matrix protein FRAS1 isoform X4

Conserved Domains (9) summary

pfam03302
Location:515 → 915

VSP; Giardia variant-specific surface protein

smart00237
Location:2455 → 2550

Calx_beta; Domains in Na-Ca exchangers and integrin-beta4

smart00214
Location:28 → 87

VWC; von Willebrand factor (vWF) type C domain

TIGR00845
Location:2680 → 2947

caca; sodium/calcium exchanger 1

pfam00093
Location:95 → 152

VWC; von Willebrand factor type C domain

pfam14843
Location:412 → 529

GF_recep_IV; Growth factor receptor domain IV

pfam15913
Location:909 → 999

Furin-like_2; Furin-like repeat, cysteine-rich

pfam16184
Location:2197 → 2306

Cadherin_3; Cadherin-like

cl02522
Location:2939 → 3033

Calx-beta; Calx-beta domain
XM_031664540.1 → XP_031520400.1 extracellular matrix protein FRAS1 isoform X5

Conserved Domains (4) summary

pfam03302
Location:3 → 324

VSP; Giardia variant-specific surface protein

TIGR00845
Location:2026 → 2293

caca; sodium/calcium exchanger 1

pfam16184
Location:1543 → 1652

Cadherin_3; Cadherin-like

cl02522
Location:1801 → 1896

Calx-beta; Calx-beta domain