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KHDRBS1 KH RNA binding domain containing, signal transduction associated 1 [ Papio anubis (olive baboon) ]

Gene ID: 101001226, updated on 8-Mar-2024

Summary

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Gene symbol
KHDRBS1
Gene description
KH RNA binding domain containing, signal transduction associated 1
See related
Ensembl:ENSPANG00000023230
Gene type
protein coding
RefSeq status
MODEL
Organism
Papio anubis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Papio
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 1
Exon count:
10
Annotation release Status Assembly Chr Location
104 current Panubis1.0 (GCF_008728515.1) 1 NC_044976.1 (30271724..30317696)
103 previous assembly Panu_3.0 (GCF_000264685.3) 1 NC_018152.2 (30301654..30347689)

Chromosome 1 - NC_044976.1Genomic Context describing neighboring genes Neighboring gene SPOC domain containing 1 Neighboring gene protein tyrosine phosphatase 4A2 Neighboring gene transmembrane protein 39B Neighboring gene uncharacterized LOC116274980 Neighboring gene karyopherin subunit alpha 6

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables mRNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables poly(A) binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of alternative mRNA splicing, via spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
KH domain-containing, RNA-binding, signal transduction-associated protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Papio anubis Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Panubis1.0 Primary Assembly

Genomic

  1. NC_044976.1 Reference Panubis1.0 Primary Assembly

    Range
    30271724..30317696
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_031666552.1 → XP_031522412.1  KH domain-containing, RNA-binding, signal transduction-associated protein 1

    UniProtKB/TrEMBL
    A0A096N322
    Conserved Domains (3) summary
    cd02395
    Location:211 → 330
    SF1_like-KH; Splicing factor 1 (SF1) K homology RNA-binding domain (KH). Splicing factor 1 (SF1) specifically recognizes the intron branch point sequence (BPS) UACUAAC in the pre-mRNA transcripts during spliceosome assembly. We show that the KH-QUA2 region of SF1 ...
    pfam16274
    Location:156 → 207
    Qua1; Qua1 domain
    pfam16568
    Location:420 → 469
    Sam68-YY; Tyrosine-rich domain of Sam68

  2. XM_031666553.1 → XP_031522413.1  KH domain-containing, RNA-binding, signal transduction-associated protein 1

    UniProtKB/TrEMBL
    A0A096N322
    Related
    ENSPANP00000006720.2, ENSPANT00000007463.3
    Conserved Domains (3) summary
    cd02395
    Location:211 → 330
    SF1_like-KH; Splicing factor 1 (SF1) K homology RNA-binding domain (KH). Splicing factor 1 (SF1) specifically recognizes the intron branch point sequence (BPS) UACUAAC in the pre-mRNA transcripts during spliceosome assembly. We show that the KH-QUA2 region of SF1 ...
    pfam16274
    Location:156 → 207
    Qua1; Qua1 domain
    pfam16568
    Location:420 → 469
    Sam68-YY; Tyrosine-rich domain of Sam68
Nucleotide Protein
Heading Accession and Version

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