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COL4A4 collagen type IV alpha 4 chain [ Papio anubis (olive baboon) ]

Gene ID: 101000307, updated on 8-Mar-2024

Summary

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Gene symbol
COL4A4
Gene description
collagen type IV alpha 4 chain
Gene type
protein coding
RefSeq status
MODEL
Organism
Papio anubis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Papio
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 10
Exon count:
48
Annotation release Status Assembly Chr Location
104 current Panubis1.0 (GCF_008728515.1) 10 NC_044985.1 (110792691..110952705, complement)
103 previous assembly Panu_3.0 (GCF_000264685.3) 12 NC_018163.2 (112971819..113135572, complement)

Chromosome 10 - NC_044985.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC103876570 Neighboring gene rhomboid domain containing 1 Neighboring gene small nucleolar RNA SNORA48 Neighboring gene collagen type IV alpha 3 chain Neighboring gene uncharacterized LOC103876573 Neighboring gene mitochondrial fission factor

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables extracellular matrix structural constituent IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of collagen trimer IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
collagen alpha-4(IV) chain

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Papio anubis Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Panubis1.0 Primary Assembly

Genomic

  1. NC_044985.1 Reference Panubis1.0 Primary Assembly

    Range
    110792691..110952705 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_031651712.1 → XP_031507572.1  collagen alpha-4(IV) chain

    Conserved Domains (2) summary
    pfam01391
    Location:852 → 903
    Collagen; Collagen triple helix repeat (20 copies)
    pfam01413
    Location:1491 → 1595
    C4; C-terminal tandem repeated domain in type 4 procollagen
Nucleotide Protein
Heading Accession and Version

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