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LOC100994485 CD99 molecule (Xg blood group) [ Pan paniscus (pygmy chimpanzee) ]

Gene ID: 100994485, updated on 6-Jun-2024

Summary

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Gene symbol
LOC100994485
Gene description
CD99 molecule (Xg blood group)
See related
Ensembl:ENSPPAG00000029753
Gene type
protein coding
RefSeq status
MODEL
Organism
Pan paniscus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
Also known as
CD99
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Genomic context

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Location:
chromosome: X, chromosome: Y
Exon count:
11
Annotation release Status Assembly Chr Location
RS_2024_02 current NHGRI_mPanPan1-v2.0_pri (GCF_029289425.2) X NC_073272.2 (2433098..2484973)
RS_2024_02 current NHGRI_mPanPan1-v2.0_pri (GCF_029289425.2) Y NC_073273.2 (44439873..44492027, complement)
RS_2023_05 previous assembly NHGRI_mPanPan1-v1.1-0.1.freeze_pri (GCF_029289425.1) X NC_073272.1 (2436860..2488645)
RS_2023_05 previous assembly NHGRI_mPanPan1-v1.1-0.1.freeze_pri (GCF_029289425.1) Y NC_073273.1 (2434971..2487126)

Chromosome X - NC_073272.2Genomic Context describing neighboring genes Neighboring gene dehydrogenase/reductase X-linked Neighboring gene zinc finger BED-type containing 1 Neighboring gene uncharacterized LOC129395248 Neighboring gene Xg glycoprotein (Xg blood group) Neighboring gene glycogenin 2

Chromosome Y - NC_073273.2Genomic Context describing neighboring genes Neighboring gene ribonuclease H2 subunit C-like Neighboring gene U6 spliceosomal RNA Neighboring gene Xg glycoprotein (Xg blood group) Neighboring gene sex determining region Y Neighboring gene serine/arginine repetitive matrix protein 1-like Neighboring gene dehydrogenase/reductase X-linked Neighboring gene zinc finger BED-type containing 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in T cell extravasation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in homotypic cell-cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of neutrophil extravasation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
CD99 antigen

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_029289425.2-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NHGRI_mPanPan1-v2.0_pri Primary Assembly

Genomic

  1. NC_073272.2 Reference NHGRI_mPanPan1-v2.0_pri Primary Assembly

    Range
    2433098..2484973
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003814383.6 → XP_003814431.1  CD99 antigen isoform X1

    UniProtKB/TrEMBL
    A0A2R9A8D1, A0A2R9AC51
    Related
    ENSPPAP00000013156.1
    Conserved Domains (1) summary
    pfam12301
    Location:26 → 179
    CD99L2; CD99 antigen like protein 2

  2. XM_057301074.2 → XP_057157057.1  CD99 antigen isoform X2

    UniProtKB/TrEMBL
    A0A2R9A8D1

  3. XM_057301075.2 → XP_057157058.1  CD99 antigen isoform X3

    UniProtKB/TrEMBL
    A0A2R9A7B3, A0A2R9A8D1

Reference NHGRI_mPanPan1-v2.0_pri Primary Assembly

Genomic

  1. NC_073273.2 Reference NHGRI_mPanPan1-v2.0_pri Primary Assembly

    Range
    44439873..44492027 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_055107009.3 → XP_054962984.1  CD99 antigen isoform X1

    UniProtKB/TrEMBL
    A0A2R9A8D1, A0A2R9AC51

  2. XM_057301224.2 → XP_057157207.1  CD99 antigen isoform X2

    UniProtKB/TrEMBL
    A0A2R9A8D1

  3. XM_057301225.2 → XP_057157208.1  CD99 antigen isoform X3

    UniProtKB/TrEMBL
    A0A2R9A7B3, A0A2R9A8D1
Nucleotide Protein
Heading Accession and Version

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