U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

UTP4 UTP4 small subunit processome component [ Pan paniscus (pygmy chimpanzee) ]

Gene ID: 100977899, updated on 8-Mar-2024

Summary

Go to the top of the page Help
Gene symbol
UTP4
Gene description
UTP4 small subunit processome component
See related
Ensembl:ENSPPAG00000028245
Gene type
protein coding
RefSeq status
MODEL
Organism
Pan paniscus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Location:
chromosome: 18
Exon count:
18
Annotation release Status Assembly Chr Location
RS_2024_02 current NHGRI_mPanPan1-v2.0_pri (GCF_029289425.2) 18 NC_073267.2 (78673495..78710255)
RS_2023_05 previous assembly NHGRI_mPanPan1-v1.1-0.1.freeze_pri (GCF_029289425.1) 16 NC_073265.1 (84585387..84621873)

Chromosome 18 - NC_073267.2Genomic Context describing neighboring genes Neighboring gene hyaluronan synthase 3 Neighboring gene DERPC proline and glycine rich nuclear protein Neighboring gene chromosome transmission fidelity factor 8 Neighboring gene U6 spliceosomal RNA Neighboring gene syntrophin beta 2 Neighboring gene zinc finger CCHC-type and RNA-binding motif-containing protein 1-like

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of 90S preribosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of small-subunit processome IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of t-UTP complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
U3 small nucleolar RNA-associated protein 4 homolog

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: GCF_029289425.2-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NHGRI_mPanPan1-v2.0_pri Primary Assembly

Genomic

  1. NC_073267.2 Reference NHGRI_mPanPan1-v2.0_pri Primary Assembly

    Range
    78673495..78710255
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003814548.5 → XP_003814596.1  U3 small nucleolar RNA-associated protein 4 homolog isoform X1

    See identical proteins and their annotated locations for XP_003814596.1

    UniProtKB/TrEMBL
    A0A2R9A433, A0A2R9A441
    Related
    ENSPPAP00000010045.1
    Conserved Domains (3) summary
    COG2319
    Location:238 → 547
    WD40; WD40 repeat [General function prediction only]
    sd00039
    Location:20 → 57
    7WD40; WD40 repeat [structural motif]
    cl25539
    Location:16 → 306
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

  2. XM_008967252.3 → XP_008965500.1  U3 small nucleolar RNA-associated protein 4 homolog isoform X4

    See identical proteins and their annotated locations for XP_008965500.1

    UniProtKB/TrEMBL
    A0A2R9A441
    Conserved Domains (3) summary
    COG2319
    Location:155 → 464
    WD40; WD40 repeat [General function prediction only]
    sd00039
    Location:22 → 60
    7WD40; WD40 repeat [structural motif]
    cl29593
    Location:3 → 223
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

  3. XM_063597700.1 → XP_063453770.1  U3 small nucleolar RNA-associated protein 4 homolog isoform X3

  4. XM_063597699.1 → XP_063453769.1  U3 small nucleolar RNA-associated protein 4 homolog isoform X2

  5. XM_034940549.3 → XP_034796440.1  U3 small nucleolar RNA-associated protein 4 homolog isoform X4

    UniProtKB/TrEMBL
    A0A2R9A441
    Conserved Domains (3) summary
    COG2319
    Location:155 → 464
    WD40; WD40 repeat [General function prediction only]
    sd00039
    Location:22 → 60
    7WD40; WD40 repeat [structural motif]
    cl29593
    Location:3 → 223
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.