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SNX21 sorting nexin family member 21 [ Pan paniscus (pygmy chimpanzee) ]

Gene ID: 100968307, updated on 6-Jun-2024

Summary

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Gene symbol
SNX21
Gene description
sorting nexin family member 21
See related
Ensembl:ENSPPAG00000027685
Gene type
protein coding
RefSeq status
MODEL
Organism
Pan paniscus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
Orthologs
human mouse all
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Genomic context

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See SNX21 in Genome Data Viewer
Location:
chromosome: 21
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2024_02 current NHGRI_mPanPan1-v2.0_pri (GCF_029289425.2) 21 NC_073270.2 (51575496..51584015)
RS_2023_05 previous assembly NHGRI_mPanPan1-v1.1-0.1.freeze_pri (GCF_029289425.1) 20 NC_073269.1 (51568737..51576863)

Chromosome 21 - NC_073270.2Genomic Context describing neighboring genes Neighboring gene deoxynucleotidyltransferase terminal interacting protein 1 Neighboring gene ubiquitin conjugating enzyme E2 C Neighboring gene troponin C2, fast skeletal type Neighboring gene acyl-CoA thioesterase 8 Neighboring gene zinc finger SWIM-type containing 3 Neighboring gene zinc finger SWIM-type containing 1 Neighboring gene spermatogenesis associated 25 Neighboring gene neuralized E3 ubiquitin protein ligase 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables phosphatidylinositol phosphate binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in early endosome membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
sorting nexin-21

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_029289425.2-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NHGRI_mPanPan1-v2.0_pri Primary Assembly

Genomic

  1. NC_073270.2 Reference NHGRI_mPanPan1-v2.0_pri Primary Assembly

    Range
    51575496..51584015
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_008951370.5 → XP_008949618.1  sorting nexin-21 isoform X10

    UniProtKB/TrEMBL
    A0A2R8ZVD1

  2. XM_063601077.1 → XP_063457147.1  sorting nexin-21 isoform X9

    UniProtKB/TrEMBL
    A0A2R8ZVD1

  3. XM_003825982.6 → XP_003826030.2  sorting nexin-21 isoform X1

    UniProtKB/TrEMBL
    A0A2R9A0Y2
    Conserved Domains (3) summary
    sd00006
    Location:244 → 268
    TPR; TPR repeat [structural motif]
    pfam13424
    Location:244 → 313
    TPR_12; Tetratricopeptide repeat
    cl02563
    Location:131 → 242
    PX_domain; The Phox Homology domain, a phosphoinositide binding module

  4. XM_055104850.2 → XP_054960825.1  sorting nexin-21 isoform X3

  5. XM_057300859.2 → XP_057156842.1  sorting nexin-21 isoform X8

    UniProtKB/TrEMBL
    A0A2R8ZVC6, A0A2R8ZVD1

  6. XM_055104852.2 → XP_054960827.1  sorting nexin-21 isoform X6

    UniProtKB/TrEMBL
    A0A2R8ZVD1

  7. XM_055104851.1 → XP_054960826.1  sorting nexin-21 isoform X5

    UniProtKB/TrEMBL
    A0A2R8ZVD1

  8. XM_055104853.1 → XP_054960828.1  sorting nexin-21 isoform X7

    UniProtKB/TrEMBL
    A0A2R8ZVD0, A0A2R8ZVD1

  9. XM_063601076.1 → XP_063457146.1  sorting nexin-21 isoform X4

  10. XM_055104849.2 → XP_054960824.1  sorting nexin-21 isoform X2

Nucleotide Protein
Heading Accession and Version

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