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PCDH9 protocadherin 9 [ Otolemur garnettii (small-eared galago) ]

Gene ID: 100961218, updated on 8-Mar-2024

Summary

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Gene symbol
PCDH9
Gene description
protocadherin 9
Gene type
protein coding
RefSeq status
MODEL
Organism
Otolemur garnettii
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Strepsirrhini; Lorisiformes; Galagidae; Otolemur
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
5
Annotation release Status Assembly Chr Location
102 current OtoGar3 (GCF_000181295.1) Unplaced Scaffold NW_003852435.1 (12885853..13765028, complement)

NW_003852435.1Genomic Context describing neighboring genes Neighboring gene ATP synthase subunit epsilon, mitochondrial pseudogene Neighboring gene eukaryotic translation initiation factor 3 subunit G pseudogene Neighboring gene eukaryotic translation initiation factor 3 subunit D pseudogene Neighboring gene U7 small nuclear RNA Neighboring gene U2 spliceosomal RNA Neighboring gene U7 small nuclear RNA Neighboring gene microtubule-associated protein RP/EB family member 1 pseudogene

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_003852435 Unplaced Scaffold Reference OtoGar3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in homophilic cell adhesion via plasma membrane adhesion molecules IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protocadherin-9

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Otolemur garnettii Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference OtoGar3

Genomic

  1. NW_003852435.1 Reference OtoGar3

    Range
    12885853..13765028 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_023513423.1 → XP_023369191.1  protocadherin-9 isoform X4

    Conserved Domains (2) summary
    cd11304
    Location:576 → 671
    Cadherin_repeat; Cadherin tandem repeat domain
    pfam08374
    Location:777 → 997
    Protocadherin

  2. XM_023513422.1 → XP_023369190.1  protocadherin-9 isoform X3

    Conserved Domains (2) summary
    cd11304
    Location:576 → 671
    Cadherin_repeat; Cadherin tandem repeat domain
    pfam08374
    Location:777 → 997
    Protocadherin

  3. XM_003790161.3 → XP_003790209.1  protocadherin-9 isoform X1

    Conserved Domains (3) summary
    cd11304
    Location:576 → 671
    Cadherin_repeat; Cadherin tandem repeat domain
    pfam08374
    Location:777 → 997
    Protocadherin; Protocadherin
    cl09101
    Location:28 → 117
    E_set; Early set domain associated with the catalytic domain of sugar utilizing enzymes at either the N or C terminus

  4. XM_023513421.1 → XP_023369189.1  protocadherin-9 isoform X2

    Conserved Domains (2) summary
    cd11304
    Location:576 → 671
    Cadherin_repeat; Cadherin tandem repeat domain
    pfam08374
    Location:777 → 997
    Protocadherin
Nucleotide Protein
Heading Accession and Version

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