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ASB13 ankyrin repeat and SOCS box containing 13 [ Sarcophilus harrisii (Tasmanian devil) ]

Gene ID: 100930981, updated on 8-Mar-2024

Summary

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Gene symbol
ASB13
Gene description
ankyrin repeat and SOCS box containing 13
See related
Ensembl:ENSSHAG00000007534
Gene type
protein coding
RefSeq status
MODEL
Organism
Sarcophilus harrisii
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Metatheria; Dasyuromorphia; Dasyuridae; Sarcophilus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 5
Exon count:
8
Annotation release Status Assembly Chr Location
103 current mSarHar1.11 (GCF_902635505.1) 5 NC_045430.1 (65261183..65328031, complement)
102 previous assembly Devil_ref v7.0 (GCF_000189315.1) 5 Unlocalized Scaffold NW_003843630.1 (325399..353641, complement)

Chromosome 5 - NC_045430.1Genomic Context describing neighboring genes Neighboring gene calmodulin-A Neighboring gene membrane magnesium transporter 1 Neighboring gene transcription activation suppressor family member 2 Neighboring gene GDP dissociation inhibitor 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in intracellular signal transduction IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of protein catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein ubiquitination IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ankyrin repeat and SOCS box protein 13

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sarcophilus harrisii Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mSarHar1.11 Primary Assembly

Genomic

  1. NC_045430.1 Reference mSarHar1.11 Primary Assembly

    Range
    65261183..65328031 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_031939973.1 → XP_031795833.1  ankyrin repeat and SOCS box protein 13 isoform X2

    Conserved Domains (3) summary
    COG0666
    Location:82 → 229
    ANKYR; Ankyrin repeat [Signal transduction mechanisms]
    TIGR00870
    Location:200 → 263
    trp; transient-receptor-potential calcium channel protein
    sd00045
    Location:167 → 195
    ANK; ANK repeat [structural motif]

  2. XM_023504661.2 → XP_023360429.2  ankyrin repeat and SOCS box protein 13 isoform X1

    UniProtKB/TrEMBL
    G3VZU1
    Related
    ENSSHAP00000008696.1, ENSSHAT00000008768.2
    Conserved Domains (4) summary
    PHA02876
    Location:71 → 269
    PHA02876; ankyrin repeat protein; Provisional
    cd03729
    Location:285 → 326
    SOCS_ASB13; SOCS (suppressors of cytokine signaling) box of ASB13-like proteins. ASB family members have a C-terminal SOCS box and an N-terminal ankyrin-related sequence. The general function of the SOCS box is the recruitment of the ubiquitin-transferase system. ...
    sd00045
    Location:167 → 195
    ANK; ANK repeat [structural motif]
    pfam12796
    Location:104 → 195
    Ank_2; Ankyrin repeats (3 copies)
Nucleotide Protein
Heading Accession and Version

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